| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2831 |
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| Symbol | |
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| ID | 5454642 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 3034158 |
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| End bp | 3036842 |
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| Gene Length | 2685 bp |
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| Protein Length | 894 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640878412 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001414095 |
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| Protein GI | 154253271 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 49 |
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| Fosmid unclonability p-value | 0.442826 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGTCG TTATTGTCGA GTCGCCGGCC AAGGCGAAAA CCATCAACAA ATATCTCGGC
AAGGGCTTCA AGGTCCTGGC CTCCTACGGC CATGTCCGTG ACCTGCCCTC GAAGGATGGC
TCCGTCCTCC CCGATCAGGA CTTCGCCATG GCCTGGGATG TCGATGCCAA GTCCCAGAAG
CGGCTGAACG AAATCGCCAC CGCCGTAAAG GGCGCCGATC GTCTGATCCT CGCAACCGAC
CCGGATCGCG AAGGCGAGGC CATTTCCTGG CATGTGCTCG AGGTCCTGAA TAAAAAGAAG
GTGCTGAAGG ACGTCGAGGT CCAGCGCGTC GTCTTCAACG CCATCACCAA GAAATCCGTC
ACCGAGGCGA TGGAGCATCC GCGCGGCCTC GACAAGGAAC TGATCGACGC CTATCTCGCG
CGCCGCGCCC TCGACTACCT CGTCGGCTTC ACCCTTTCGC CCGTTCTCTG GCGCAAGCTT
CCGGGCTCGC GCTCGGCAGG CCGTGTGCAG TCCGTCGCGC TCCGCCTCAT CTGCGACCGC
GAACTCGAAA TCGAAGCCTT CCGCAGCCAG GAATACTGGA CCGTCGAAGC AGACATGAAG
ACTGGCGGCG GTTCTCCTTT CGTCGCCCGC CTCACCGTGC TCGACGGCAA GAAGCTCGAC
AAGTTCGACA TCCCGGACAA GAAATCCGCC GACGACATCG AAGCGCGCAT CAAGGCCTCG
CGCTTCTCCG TTAAGTCGGT CGAGAGCAAG CCGACGCGGC GCAATCCGAA TCCGCCCTTC
ACCACCTCCA CCATCCAGCA GGAAGCCTCG CGCAAGCTCG GCTTCTCGGC GAGCCGCACC
ATGCAGGTCG CCCAGCGCCT CTATGAGGGC GTGGAGATCG ACGGCGAAAC GACAGGCCTC
ATCACCTATA TGCGAACCGA CGGCGTGCAG ATCGCCCCTG AGGCCATCGC GCAGGCACGC
ACCGTCATCA ACAACGAGTT CGGCGAGGCC TATCTGCCGG ATGCGCCCCG CGTCTACACC
ACCAAGGCGA AGAACGCGCA GGAAGCGCAT GAGGCGATCC GTCCGACCGA TCTCTCGCGT
TTGCCGAAAC ATGCCGCGAA ATATCTCGAC GACGACCAGC GCCGCCTCTA CGAACTCGTC
TGGAACCGCA CCATCGCCAG CCAGATGGAA AGCGTGCAGC TTGAGCGCAC CACCATCGAG
ATCGAGGCGG ACGACGCGCC CATCGGCCTT CGCGCCACCG GTTCCGTCAT CGTCTTCGAC
GGTTTCCTGC GCCTCTACCA GGAAGGCCGC GACGAGCCGG ATGATGGCGA GGATGGCGGC
CGCCTGCCGA AGGTCGCCCG CGGCGACAAG CTCGGCCTCG AGAAGGTCCG TCCCGAACAG
CATTTCACGG AGCCGCCGCC CCGCTTCACC GAGGCGAGCA TCGTCAAGCG GATGGAAGAA
CTCGGCATCG GCCGTCCTTC TACCTACGCC TCGACTCTGC AAACGCTGCG CGACCGCGAC
TATGTCCACA TGGACAAGAA CCGCCTCGTG CCGCAGGACA AGGGCCGCCT CGTCACCGCC
TTCCTCGAAA ACTTCTTCAC CCGCTATGTC GAATACGACT TCACGGCGGA ACTGGAAGAA
AAGCTCGACA AGGTGTCGGC CGGCGAGCTC GACTGGAAAG ACCTGCTGCG CGAATTCTGG
AAGGAATTCA CGGTCAACGT CGCCGAGGCG CTGGAGCTGC GCATCACCGA GGTGCTCGAC
CGTCTCAATG AGGTTCTTGG CCCGCACGTC TTCCCCGAAA AGGAAGACGG TTCCAACCCG
CGTGCCTGCC CGTCATGCGG CAACGGCATC CTCTCGCTCA AGGTCGGCCG CTTCGGCGCC
TTTGTCGGCT GCTCGAATTA TCCGGACTGC AAATTCACGC GCCAGCTCAC TGTCGGCGCC
GAAGGCGAAG AACAGGCGGG CGACCGCGTT CTCGGCACCG ATCCCGAGAC CGGCGCCGAA
GTCTCGCTGA AGACCGGCCG CTTCGGTCCC TATGTCGAGC GCGCGCCGCT CGGCGACGAT
GAAAAGCCGA AGCGCAGCGG CCTGCCCGCG AAAATGTCCG CCGCAGATGT CGATCTCGAC
ACCGCGCTGC GCCTGCTGAC GCTGCCGCGG GAAATCGGCA TCCATCCCGA AACCGGCAAG
AAGATCACCG CCGGCCTCGG CCGCTTCGGT CCCTTCGTGC TGCATGACGG CACCTATGCG
AACCTGAAAG ACCCGGAAGA GCTTTTCGAC ATCGGGCTCA ATCGCGCCAT AGCCGTCCTC
GCCGAAAAAG TCATCCGCGC CGAGGAGCGC GCCGGCAAGG TGCTGAAGGA ACTGGGCGAC
CATCCCGACA CCGGCAAGCC CGTGCAGGTC CGCGAAGGCA AATACGGCCC CTACATCAAG
CACGGCACCA CCAACGCGAC GCTGCCGAAA TCCGCCGATC CTGCCGCCGT GACGCTGGAA
GAGGCCCTCG CTCTCGTCGC CGAAAAAGAT GCGAAGAGCG GCAAGAAGAA ACCTGCCGCA
AAGAAGGCGG CGAAAAAGCC TGCCGCCGAA AAGAAACCGG CAGCAAAGAA AGCGCCCGCG
AAAAAGCCCG AAAAAAAGAA AGCACCTGCG AAGAAGAAAG CGCCTGCGAA AAAACCCGCG
GCGAAAGCAA GGAAGACCGA CAAAGCCTCC GAACTGGCGG ATTGA
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| Protein sequence | MDVVIVESPA KAKTINKYLG KGFKVLASYG HVRDLPSKDG SVLPDQDFAM AWDVDAKSQK
RLNEIATAVK GADRLILATD PDREGEAISW HVLEVLNKKK VLKDVEVQRV VFNAITKKSV
TEAMEHPRGL DKELIDAYLA RRALDYLVGF TLSPVLWRKL PGSRSAGRVQ SVALRLICDR
ELEIEAFRSQ EYWTVEADMK TGGGSPFVAR LTVLDGKKLD KFDIPDKKSA DDIEARIKAS
RFSVKSVESK PTRRNPNPPF TTSTIQQEAS RKLGFSASRT MQVAQRLYEG VEIDGETTGL
ITYMRTDGVQ IAPEAIAQAR TVINNEFGEA YLPDAPRVYT TKAKNAQEAH EAIRPTDLSR
LPKHAAKYLD DDQRRLYELV WNRTIASQME SVQLERTTIE IEADDAPIGL RATGSVIVFD
GFLRLYQEGR DEPDDGEDGG RLPKVARGDK LGLEKVRPEQ HFTEPPPRFT EASIVKRMEE
LGIGRPSTYA STLQTLRDRD YVHMDKNRLV PQDKGRLVTA FLENFFTRYV EYDFTAELEE
KLDKVSAGEL DWKDLLREFW KEFTVNVAEA LELRITEVLD RLNEVLGPHV FPEKEDGSNP
RACPSCGNGI LSLKVGRFGA FVGCSNYPDC KFTRQLTVGA EGEEQAGDRV LGTDPETGAE
VSLKTGRFGP YVERAPLGDD EKPKRSGLPA KMSAADVDLD TALRLLTLPR EIGIHPETGK
KITAGLGRFG PFVLHDGTYA NLKDPEELFD IGLNRAIAVL AEKVIRAEER AGKVLKELGD
HPDTGKPVQV REGKYGPYIK HGTTNATLPK SADPAAVTLE EALALVAEKD AKSGKKKPAA
KKAAKKPAAE KKPAAKKAPA KKPEKKKAPA KKKAPAKKPA AKARKTDKAS ELAD
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