Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_2656 |
Symbol | |
ID | 5453609 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 2857944 |
End bp | 2859377 |
Gene Length | 1434 bp |
Protein Length | 477 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640878233 |
Product | carotenoid oxygenase |
Protein accession | YP_001413921 |
Protein GI | 154253097 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3670] Lignostilbene-alpha,beta-dioxygenase and related enzymes |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 55 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGAAGC CTTATCCGAA CAATCCGTTT CTACAGGCGA ATTTTGCGCC GGTGCAGGCG GAGTGCGATG CGCCGGACCT TGTGGTGGTG GAAGGGGAGT TGCCGCGCGA GCTGACGGGC ACGCTTTACC GCAATGGACC GAACCCGATG TTTCCGCCCC TCGGCAACCA GCATCACTGG TTTCTCGGTG AAGGCATGAT CCATGCGATC CGCGTGGAGG ACGGGAAGGC GAGCTACCGG AACAAATGGG TGCATACGGA GCAATACGAA GCGCAGCGGA AGGCGGGCAA GCGCCTGCTG CCGACGGGCT TCGGCGAAGC GCCGGTGGAG GGCGCGGAGA ATGTGAAGCG TAATGTCGCC AATACCAATA TCGTCTGGCA CGCCGGCAAG CTGCTGGCGC TGGACGAGGG AAATTCGCCG GTGGCGATGG ATGGCGACAC GCTGGAAACG GCGGGGCCGT GGACCTTCGA GGGAAAATAC CAGGGGCCGA TGACGGCGCA TCCGAAGCTC GATCCGCGCA CGGGCGAGAT GCATTTCTTC GGCTATATGG CGGCAGGCCC GGCGACGCCC GATATTTCCT ACCAGGTGGT GGACCGCAAT GGCGCGCTCA TCCGCAGCGA CATGTTCAAG GCGCCTTATG CGAGCATGGT GCATGACTTC ATCGTGACCG ACGAGCATGT GATCTTTCCG ATCTTTCCGG CGACGATCGA CGTCGACCGG ATCATGAAGG GCGGACCGGT GATCGCATGG GACCCCGATG CAGGCTCGCA TATCGGCATC ATGGCGCGGG ACGCGAGTGT CGATACGATC CGCTGGTTCA AGGGCGACCC CTGCTATGTC TATCATCCGA TGAACGCATG GACGACGCAT GAAGGCGGGC GCACGCGGGT CATCGCGGAT GTGATGAAGT ACAGCCGCGT GCCGCTCTTT CCGAATGCGG ATGGCAGCAA GGCGCCGGCC AGTCTCACCG ACGAGCAGAG CCTGTTGGTG CGCTGGACGT TCGATCTCGA CAGCAATTCG GATTCCTACA CGGAAGAAGT TCTGACCGAT CTCGGCGGCG AGTTTCCGCG CTTCGACGAG CGGTTTGCGG GACACAAGAA CCGGCATGGC TATTACGCCG CGATGCGGCG GCCGAAGGAA GCGCCGGGTG CGTCCTACGA CACGTTTGTG CATATCGATC TTCAAAGCGG CAAGCGGCGT GAGTGGGAGC CGGGTGTAGG GAGGTATGTG CACGAGCCGG TTTTCGTGCC GCGCAAGGAG AGTGCGGCGG AGGGTGACGG CTTTCTGGTG TCGCTCTGCT ACGACACGGC GCGAAACATC AGCGACTTCA TCGTTCTCGA CACGGACGAT ATTTCCAGGG GCCCGGTGGC GCGAGTAGAG CTGCCAATGA GGGTGCCTTT CGGCTTCCAC GGGAACTGGC GAAACGGGGC ATAA
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Protein sequence | MSKPYPNNPF LQANFAPVQA ECDAPDLVVV EGELPRELTG TLYRNGPNPM FPPLGNQHHW FLGEGMIHAI RVEDGKASYR NKWVHTEQYE AQRKAGKRLL PTGFGEAPVE GAENVKRNVA NTNIVWHAGK LLALDEGNSP VAMDGDTLET AGPWTFEGKY QGPMTAHPKL DPRTGEMHFF GYMAAGPATP DISYQVVDRN GALIRSDMFK APYASMVHDF IVTDEHVIFP IFPATIDVDR IMKGGPVIAW DPDAGSHIGI MARDASVDTI RWFKGDPCYV YHPMNAWTTH EGGRTRVIAD VMKYSRVPLF PNADGSKAPA SLTDEQSLLV RWTFDLDSNS DSYTEEVLTD LGGEFPRFDE RFAGHKNRHG YYAAMRRPKE APGASYDTFV HIDLQSGKRR EWEPGVGRYV HEPVFVPRKE SAAEGDGFLV SLCYDTARNI SDFIVLDTDD ISRGPVARVE LPMRVPFGFH GNWRNGA
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