| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2653 |
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| Symbol | |
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| ID | 5454451 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 2855952 |
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| End bp | 2856752 |
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| Gene Length | 801 bp |
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| Protein Length | 266 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640878230 |
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| Product | rhomboid family protein |
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| Protein accession | YP_001413918 |
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| Protein GI | 154253094 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.541803 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 58 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTGAAC CGCTGCCGTC CGATACCGAA GCGCGGCGCG AGCCGCCGGC CTTCAACGTG
CCCGGACCGG TGGGTCTGCT GCTTGTGCTG ATTGTGGGCG TGTTCCTCGC GATGAGTTTG
CTGCCGCCGG AAACGGTGGA GCAGGCGATC CTGCTTTTCG CGCTCTTCCC GGCGCGCTAT
TCGCCGCAAG CCTTGTCGCT TTACGGAGAA CTTCCGGGTG GCTTCGGGGC GGAACTATGG
ACCCCCGTCA CCTATACGTT TCTTCATAGC GGCTGGGAGC ATCTGATTGC GAACGGCGTC
TGGCTACTTG CATTCGGGAC GCCTGTCGCA AGGCGTTTCG GCGCTTCGCG ATTTTTCATT
TTCTATTTCG CCTGCGGCGC AGCGGGCGCC TTTCTCCATG TGCTGCTTTA TCCCGGATCG
CCGATCCCTG TCGTGGGGGC CTCGGCCGCC ATATCGGGGT TGATGGGAGG AGCGGCGCGG
TTCGTCTTTC TCGCCGGCGG CCCCCTGGGT GGACTTGGCG GCCGGGGCGG GCACTCAACG
CGGCGGGCCG GCATACTCGC GGCCCTCGCC GACAGGCGAA CGCTGATCTT TGTCGGGCTC
TGGATCGGGG TGAATTTTCT TTTCGGCGCA ACGCCGCTCA GCGGCGTGCT GGGGGTGGCC
GGGCAGGTTG CGTGGGAGGC GCATCTGGGC GGCTTCCTTT TCGGCTTGCT GCTTTTCGGC
TTTTTCGATC CGCCGCGGAT GTCGCCTTCC GGCGGGCCCG GCAATGTCGG CTATGGCGAG
TGGCTGAACC GCTTCGACTA G
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| Protein sequence | MAEPLPSDTE ARREPPAFNV PGPVGLLLVL IVGVFLAMSL LPPETVEQAI LLFALFPARY
SPQALSLYGE LPGGFGAELW TPVTYTFLHS GWEHLIANGV WLLAFGTPVA RRFGASRFFI
FYFACGAAGA FLHVLLYPGS PIPVVGASAA ISGLMGGAAR FVFLAGGPLG GLGGRGGHST
RRAGILAALA DRRTLIFVGL WIGVNFLFGA TPLSGVLGVA GQVAWEAHLG GFLFGLLLFG
FFDPPRMSPS GGPGNVGYGE WLNRFD
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