| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2644 |
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| Symbol | |
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| ID | 5456666 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 2847636 |
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| End bp | 2849360 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640878221 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_001413909 |
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| Protein GI | 154253085 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.3131 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 54 |
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| Fosmid unclonability p-value | 0.995844 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGCCGC ACAGGCATCA GACGTCGCGG CGGGCGGTAC CGCGAACGGC AAAACAACAA
ATAACTGGAA ACAAGCGTAT GAGCGATTTC GACTACATCA TCATCGGTGC CGGCAGCGCG
GGATGCGTGC TGGCGAACCG CCTGTCGGAG AACCCGGCGA ACAAGGTGCT GCTGCTCGAA
GCAGGCTCGA AAGATTCCAA TTTCATGATT CACATGCCGG CAGGCGTCGG CAAGCTGATC
GGCACGGATC TCGCCAACTG GTGCTACGAC ACGGAAGGCC AGCCCCACCT GAACAACCGC
AAGCTCTATT GGCCGCGCGG CAAGGTTCTC GGCGGGTCGT CCTCTATCAA CGGCATGATC
TATATTCGCG GTCATGCGCG CGATTACGAC ATGTGGCGTC AGCTTGGTCT GGAAGGGTGG
GGCTTCTCCG ATGTTCTGCC CTATTTCCGC CGGTCGGAGG GCAATGAGAA CGGCAACAGC
GCCTTTCATG GCGGCGAAGG CCCGCTCGGC GTCAGCAATC CGCGCAAGAC CAATGTGCTC
TTCGAGTCCT TTGTCGAAGC GGGCAAGCAG GCGGGGCATC CCTATACGGA AGATTTCAAC
GGGCCGCAGC AGGAAGGCGT CGGTCCTTAC CAGCTCACGA TCAAGAACGG TCAGCGCTGC
AGCGCCGCCA AGGGTTATCT CGTGCCGGCC CTCAACCGTC CGAACCTCAA GATCGAGGTT
GAAGCGCTTA CTTCACGCGT GATCTTCGAA GGCAAGAAGG CAGTCGGCGT CGAATATACG
CAGAAGGGCG AAACGAAAGT CGCACGTGCG GCGAAGGAAA TCGTCGTCTC CGGCGGTGCG
GTCAACACGC CGCAAATCCT CATGCTTTCG GGCATCGGCA AGGGCGAGTA TCTGCGCAAG
TTCGGCCTCG ACGTGGTCGC GGACCTACCG GGCGTCGGCC AGAACCTGCA GGACCATCTT
GATTGCGTCG TCATCAACGA ATGCACGCAG CCGATCACAC TGCACAGCAC GGTCAGCAAT
CCGCTGAAGC AGCTGATGAG CGGCATGCAG TACACCTTCT TCAAAACCGG CCTTGCGACG
TCGAACGGTC TTGAATCCGG CGCTTTCCTG AAGACGCGGC CGGAGCTCGA AATTCCCGAT
ATCCAGCTTC ACTTCGTGGC CGCAATGATG CGCGATCATG CGCGGATAAA ATCTGATCGT
CACGGGTTCA CGGTGCACAT CTGTCAACTT CGACCGGAAA GCCGTGGCTA TATCGGCCTC
AAATCGACCA ACCCGTCCGA TTATGCGCTG ATCCAGCCGA ATTATCTGGC GGCCGAATAC
GACCGCAAGG TGATGCGCGA CGGTGTGAAA ATGGTGCGCA ATATTATTTC GCAGCGCGCG
ATGGACCCCT ATCGCGGGCC GGAGTTCTGG CCGGGTGCGG GCAAGCAGTC GGACGCGGAA
ATCGATGCGT GGATCCGCGA AACCGCGGAG ACAATCTATC ATCCGGTCGG CACCGCCAAG
ATGGGCACGG ACCCGATGGC TGTGGTCGAC GCGAAATGCC GCGTTCATGG GCTCCAAGGG
CTCCGTGTCG TCGATGCCTC CGTGATGCCG ACACTGGTTG GGGGCAACAC CAATGCTCCG
ACGATCATGA TCGCGGAAAA AATTTCCGAT GACATGCTCG GCAAGGCGCC ACTGCCGGCC
GAAAATGTGA CGATTGCGGA AGACCGTATC GGCAACGCAG CCTGA
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| Protein sequence | MLPHRHQTSR RAVPRTAKQQ ITGNKRMSDF DYIIIGAGSA GCVLANRLSE NPANKVLLLE
AGSKDSNFMI HMPAGVGKLI GTDLANWCYD TEGQPHLNNR KLYWPRGKVL GGSSSINGMI
YIRGHARDYD MWRQLGLEGW GFSDVLPYFR RSEGNENGNS AFHGGEGPLG VSNPRKTNVL
FESFVEAGKQ AGHPYTEDFN GPQQEGVGPY QLTIKNGQRC SAAKGYLVPA LNRPNLKIEV
EALTSRVIFE GKKAVGVEYT QKGETKVARA AKEIVVSGGA VNTPQILMLS GIGKGEYLRK
FGLDVVADLP GVGQNLQDHL DCVVINECTQ PITLHSTVSN PLKQLMSGMQ YTFFKTGLAT
SNGLESGAFL KTRPELEIPD IQLHFVAAMM RDHARIKSDR HGFTVHICQL RPESRGYIGL
KSTNPSDYAL IQPNYLAAEY DRKVMRDGVK MVRNIISQRA MDPYRGPEFW PGAGKQSDAE
IDAWIRETAE TIYHPVGTAK MGTDPMAVVD AKCRVHGLQG LRVVDASVMP TLVGGNTNAP
TIMIAEKISD DMLGKAPLPA ENVTIAEDRI GNAA
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