| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2607 |
|---|
| Symbol | |
|---|
| ID | 5455473 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 2812001 |
|---|
| End bp | 2814787 |
|---|
| Gene Length | 2787 bp |
|---|
| Protein Length | 928 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640878184 |
|---|
| Product | methylase |
|---|
| Protein accession | YP_001413872 |
|---|
| Protein GI | 154253048 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1002] Type II restriction enzyme, methylase subunits |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.483035 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.00951903 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCTGA GCTGGAACGA GATTCGCGCC CGCGCAGCGC GTTTTTCCGA GGAATGGAAA
GGTGTCACGC GCGAACGCGC CGAGACGCAG ACCTTCTATA ATGAGTTCTT CCAGATTTTC
GACATCCCGC GCCGTCGCGT CGCCTCTTAC GAAGAGCCGG TAAAGGGCCT TGGCGACAAG
CGCGGCTATA TCGACCTTTT CTGGAAAGGC ACGCTTCTTG TCGAGCACAA GACCACGGGC
CGCGACCTCA AAAAGGCAAA GATTCAGGCG CTCGATTATT TCCCGGGCCT GAAGGACAAG
GAACTCCCAC GCTACCTCCT CCTCTGCGAT TTCCAGAGCT TCGAGCTTTA CGATCTGGAC
GAAGACACCG AGGTCCGTTT CCGCCTCGCC GATCTGAAAG ATCATGTGGA AGCCTTCGGC
TTCATGATCG GCGTCCAGAA GCGCACCTTC AAGGATCAGG ACCCCGTCAA CATCGAAGCC
TCGGAGCTGA TGGGCAAGCT CCACGATGCA CTGAAGGAAT CGGGTTACGA CGGCCACGAC
CTTGAGCAAT ATCTGGTCCG GCTTCTCTTC TGCCTCTTTG CCGACGACAC CGGCATTTTC
GAGCCCAAGG ACATCCTTCT CGATTTCATC CAGAACCGCA CAAGCGCGGA TGGCAGCGAT
CTCGGCTCCC GCCTCAATGA ATTGTTCGAG GTGTTGAACA CGCCGGAAGA CAAGCGCCAG
AAAACCCTTG ATGAAGACCT CGGAAATTTC CCTTATGTGA ATGGCGCGCT TTTCGCCGAG
CGTCTGCGCA CGCCTGCCTT CAACGCCGCC ATGCGGCTGA TCCTTATCGA AGCCTGCGAG
TTCAAATGGG AGGCAATCTC GCCTGCCATT TTCGGTGCTC TGTTCCAGTC CGTCATGAAC
AAGACAGAGC GCCGCGCCCT CGGCGCGCAT TACACGACCG AGAAAAACAT CCTGAAACTC
ATTCAGCCGC TTTTCCTCGA CGGCCTGCAT GAAGAGTTCG CGCGCGCAAA GGCGCTGAAG
CGCGGCCGCC AGCAGGCGCT GGAAGCCTTG CACGAGAAAC TCGGCCAGCT CACCTTCTTC
GATCCCGCCT GCGGCTGCGG TAACTTCCTC GTCATCGCCT ATCGCGAGCT ACGCGCGCTG
GAACAGGAAA TTCTGCGCGT CCTGCACGAC GGCAAAGACC AGCGCATTTT CGACGTGGCG
CAATTGTCGA AAGTCAATGT CGATCAGTTT TACGGCATCG AAATAGGCGA GTTTCCCGCC
CGCATAGCCG AAGTCGCGAT GTGGATGATG GACCACATCA TGAATAACAG GCTCGGCCTC
TCCTTCGGCT CCAACTATGC GCGCATCCCC CTTCGGACCT CACCGCACAT CCTCCATGCC
GACGCGCTGG AAGCCGATTG GGCCGCTCTC CTCCCGCCGG AAAAATGCTC CTATGTCTTC
GGCAATCCGC CTTTCATCGG CTCAAAATTC CAGACGGCGG AACAGCGTCG GCAAGTGCGT
GACATCGCAA AGCTCGGCGG CTCCGGCGGC ACGCTTGATT TCGTCACCGC ATGGTTCCTG
AAGGCCGGCG AATATGTGCA GCATGGAAAA GCGGACATCG CCTTCGTCGC CACCAACTCA
ATCACGCAGG GCGAACAGGT CGCCCAGCTC TGGCCGCTCC TCTTTCAGCG CTGCAAGCTC
GAAATCGCCT TCGCCCACCG TACCTTCGCC TGGGGCTCGG ACGCGCGCGG CGTCGCCCAT
GTTCATGTCG TCATCATCGG CCTCACAAGG CGCGACCGCG AATGGCCCGA GAAGCGCCTC
TTCTCTTACG CCGACATCAA GGGCGATCCG GTCGAGACAC GCCACAAGGC TCTGACGGCT
TATCTTTTTG ATGCCGTCAA TGTAGCTGAC AGACATCTAG TAGTCGAAGA ACGAAACACT
CCTTTGTGCG AAGCGCCGAA ACTCAAAACT GGCGTTCAGA TGATCGACAA CGGCATCCTC
ACTTTCACGA CAATGGAAAA GGAGGAATTT CTTCGTCAGG AGCCGGAAGC GGAACCGCTG
TTCCGCAAAT ACATCGGTGG CGATGAGTAT ATAAATGGAT TTTTCCGATG GATACTCTAT
CTCGCAGATG CCGAGCCGAG TTTTCTTCGA CAGCTTCCGC TTGTTCAAGA AAGAATACGG
CAGGTACGTC AATACCGGTT ATCGAGTTCT CGGCCCAGCA CGGTGAGAAT GGCGGACTAT
CCAACGCAGG TTGGTGTGGA CGAGCGATTG AGCGGACCCT ATTTGGTGAT ACCCAATACA
AGCTCGGAGC GACGCGACTA CGTACCGATC GGCTGGCTGA CTCCCGAGGT AGTAGCCAAT
CAGAAATTGC GCATTCTTCC TGACGCAGAT CCGTGGATAT TCGGTTTGCT GACAAGCGGC
ATGCACATGG CTTGGATGCG CGCAATCACC GGTCGCATGA AAAGCGACTA CATGTATTCT
GTCGGCGTCG TCTACAACAC TTTCCCTTGG CCGGATATTA CCGAAGCTCA GAAACAGAAA
ATCCGTGCGC TAGCGCAAGC TGTGCTCGAC GCCCGCGCGC TTTATCCCGG TGCAACGCTG
GCCGATCTCT ACGATCCCGA CCTGATGAAA CGCGAACTCC GTCAGGCTCA CCGAGCCCTC
GATGCCGCCG TCGACAAACT CTATCGCGGC CAAGCCTTCG CAAATGACCG CGAGCGTGTC
GAACACCTCT TCGGCCTATA CGAAAAACTC TCCTCCCCGC TGACAGCAGC ACCGAAGCCC
ATTAAGCGGA AACGAAAGAA AGAGTAG
|
|---|
| Protein sequence | MRLSWNEIRA RAARFSEEWK GVTRERAETQ TFYNEFFQIF DIPRRRVASY EEPVKGLGDK
RGYIDLFWKG TLLVEHKTTG RDLKKAKIQA LDYFPGLKDK ELPRYLLLCD FQSFELYDLD
EDTEVRFRLA DLKDHVEAFG FMIGVQKRTF KDQDPVNIEA SELMGKLHDA LKESGYDGHD
LEQYLVRLLF CLFADDTGIF EPKDILLDFI QNRTSADGSD LGSRLNELFE VLNTPEDKRQ
KTLDEDLGNF PYVNGALFAE RLRTPAFNAA MRLILIEACE FKWEAISPAI FGALFQSVMN
KTERRALGAH YTTEKNILKL IQPLFLDGLH EEFARAKALK RGRQQALEAL HEKLGQLTFF
DPACGCGNFL VIAYRELRAL EQEILRVLHD GKDQRIFDVA QLSKVNVDQF YGIEIGEFPA
RIAEVAMWMM DHIMNNRLGL SFGSNYARIP LRTSPHILHA DALEADWAAL LPPEKCSYVF
GNPPFIGSKF QTAEQRRQVR DIAKLGGSGG TLDFVTAWFL KAGEYVQHGK ADIAFVATNS
ITQGEQVAQL WPLLFQRCKL EIAFAHRTFA WGSDARGVAH VHVVIIGLTR RDREWPEKRL
FSYADIKGDP VETRHKALTA YLFDAVNVAD RHLVVEERNT PLCEAPKLKT GVQMIDNGIL
TFTTMEKEEF LRQEPEAEPL FRKYIGGDEY INGFFRWILY LADAEPSFLR QLPLVQERIR
QVRQYRLSSS RPSTVRMADY PTQVGVDERL SGPYLVIPNT SSERRDYVPI GWLTPEVVAN
QKLRILPDAD PWIFGLLTSG MHMAWMRAIT GRMKSDYMYS VGVVYNTFPW PDITEAQKQK
IRALAQAVLD ARALYPGATL ADLYDPDLMK RELRQAHRAL DAAVDKLYRG QAFANDRERV
EHLFGLYEKL SSPLTAAPKP IKRKRKKE
|
|---|
| |