| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2604 |
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| Symbol | |
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| ID | 5455046 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 2808569 |
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| End bp | 2810257 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640878181 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_001413869 |
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| Protein GI | 154253045 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 0.142768 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGGACC AATCCTTCGA ACGCGAGGCC GATTATGTGA TTGTCGGCGC CGGATCAGCG
GGTTGCGTCC TGGCGGACCG TCTCACCGCG GAGGGCAGGC ACAAGGTGCT GGTGCTTGAG
ACGGGCGGAA GGGACAACTC CGTCTATATC AAGATGCCGA CTGCATTTTC CATCCCGCTT
GGCATGAAGA AATACGACTG GGGCATGCAT GCCGAACCGG AGCCGGGGCT CAATGGGCGG
CGGCTGCACC AGGCGCGGGG CAAGGTGATC GGCGGATCGT CGTCGATCAA CGGGCTTGCC
TATGTGCGCG GCTGCGCGGG CGACTTCGAG GAATGGGCGG AGCTGGGCGC GGCGGGATGG
GACTATGCGA GCGTGCTGCC CTATTTCCGG CGTTCCGAGG ACTGCCTCTA TGGCGAGGAT
GCCTATCGCG GCACAGGCGG GCCGGTCGGC ATCACCAATG GCAACAACAT GAAAAACCCC
CTTTACCGCG CCTTTATCGA GGCGGGGCGG CAGGCCGGCT ATGGCATGAC GGAGGATTAT
AACGGCTACC GGCAGGAGGG CTTCGGCCGC ATGGACATGA CCGTGCGGGA CGGGATTCGT
TGTTCTACGG CAGTGGCTTA CCTGAAACCG GCGATGAAGC GCGACAACCT CGAAGTGGAG
ATGCACGCGC TGGCGACGCG CATTCTGATG GAGGGCAAGC GCGCGGTCGG CGTCGAATAC
AGGCGGCGCG GCAAGCTCCA TCGCGTAAAG GCGCGGCGCG AGGTCATCGT CTCGGCGAGC
TCCTTCAACT CGCCGAAACT GCTGATGCTG TCCGGCATCG GCCCGGCGGC GCATCTGAAG
GAACACGGAA TTCCGGTCAT CCACGATCTT CCGGGGGTTG GGGATAACTT GCAGGACCAT
CTGGAGGTCT GGGTGCAGCA AACCTGCACG CAGCCGATCA CGCTGAACGG GACGCTGGGG
CCCATTTCGA AGCTGCTGAT CGGCATGGAA TGGTTCTTCC TCAAGCGCGG CCTCGGCATT
TCCAACCAGT TCGAGTCGAA CGGCTATATC AGGAGCCGCG CGGGCCTCAA GTATCCGGAT
TTGCAGTATC ATTTCCTTGC CGGCGCCATC GCTTATGACG GCTCCAGCGC GGCGGAGGGA
CATGGATTCC AGGTCCATCT GGGCGCCAAC AAGCCGAAAA GCCGCGGCCG GGTGAGCCTC
AACTCGGCCG ACCCCGAAGC ACCGCCAAAG CTCGTTTTCA ACTACCTGAC GGAAGAGGCG
GACAAGCAGG CCTATCGCGA CGGATTGCGG CTGACGCGCG AGATTTTCGC GCAAAAGGCC
TTCGATCCCT ATCGGGGGGA CGAGATATCC CCGGGGCCGA AAGTGCGGAC CGATGCGGAA
ATCGACCAGT GGGTGGCGGA AACGGCGGAG ACCGCCTATC ACCCCGCGGG CACCTGCCGG
ATGGGCGCGG ACGGCATGGC GGTGGTGGAC AGCGAGTGCC GGGTGCATGG CATCGAGGCG
CTGAGGGTGG TCGACTCATC CATCATGCCG ACGCTGCCGA ACGGCAACAT CAATGCCCCG
ACGATCATGA TCGGCGAGAA GGCGGCGGAC CATATTCTCG GAAAGCCGCT CCTGCCGGCT
TCGACGGCGG ACGCTTATCA CGCGCCGAAT TGGCAGGAAA ATCAAAGGGT TGGCAAGCCG
GAGCGATAG
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| Protein sequence | MRDQSFEREA DYVIVGAGSA GCVLADRLTA EGRHKVLVLE TGGRDNSVYI KMPTAFSIPL
GMKKYDWGMH AEPEPGLNGR RLHQARGKVI GGSSSINGLA YVRGCAGDFE EWAELGAAGW
DYASVLPYFR RSEDCLYGED AYRGTGGPVG ITNGNNMKNP LYRAFIEAGR QAGYGMTEDY
NGYRQEGFGR MDMTVRDGIR CSTAVAYLKP AMKRDNLEVE MHALATRILM EGKRAVGVEY
RRRGKLHRVK ARREVIVSAS SFNSPKLLML SGIGPAAHLK EHGIPVIHDL PGVGDNLQDH
LEVWVQQTCT QPITLNGTLG PISKLLIGME WFFLKRGLGI SNQFESNGYI RSRAGLKYPD
LQYHFLAGAI AYDGSSAAEG HGFQVHLGAN KPKSRGRVSL NSADPEAPPK LVFNYLTEEA
DKQAYRDGLR LTREIFAQKA FDPYRGDEIS PGPKVRTDAE IDQWVAETAE TAYHPAGTCR
MGADGMAVVD SECRVHGIEA LRVVDSSIMP TLPNGNINAP TIMIGEKAAD HILGKPLLPA
STADAYHAPN WQENQRVGKP ER
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