Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_2603 |
Symbol | |
ID | 5455797 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 2806469 |
End bp | 2808526 |
Gene Length | 2058 bp |
Protein Length | 685 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640878180 |
Product | choline transport protein BetT |
Protein accession | YP_001413868 |
Protein GI | 154253044 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1292] Choline-glycine betaine transporter |
TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 0.158704 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGATG TTACGGACGG CGCCGGAACG AAGGACAGAG AAGACCGGAT CAATCCGGCC GTCTTCTACA CATCCGCCGT CGGCATCGCG CTTTTTGCCA TCTGGACGAT GTTTTTCATC GATTCCGCGA ATTTCGTCAT CAATTCAGTG CTGGCGTGGA TTTCCGATGT GTTCGGCTGG TTCTACTTCG TTGCCGTGGT TCTCTATCTG GTTTTTGTGA TCGGCATCGG ACTATCCCGC TTCGGCAAGG TACGTCTCGG TCCCGACCAT GCCAGGCCGG AATTCAACGC GATCACCTGG GCGGCAATGC TTTTCGCGGC GGGTATCGGT ATTGATCTCC TCTTCTTCTG CGTCTCCGAA CCTGTCACGC AGTTCCTTGC GCCTCCCGAG GGCGAGGGCA GCACGGTCGA GGCGGCGCGG CACGCGATGC AGCTCACCTT TCTCCATTGG GGCTTGTCCG GGTGGGGCGT TTACACGCTG GTCGGGATGT CGCTTGCCTA TTTCAGCTAT CGGCACGGCC TGCCGCTGAC CATTCGTTCA GCGCTCTTTC CCATTTTCGG CCAGCGCATC TATGGCGTGA TCGGCCATAC GGTCGATATC GCCGCCGTTA TCGGGACCGT GTTCGGCATC GCGACGAGCC TCGGCATCGG CATCATCCAG CTCAACTACG GGCTGGAGCA TATGTTCGGT ATTCCGCAGA GCACCCTTAC CCAAGGCGCC CTGGTGATCC TGATCATCGT TTTCGCCGCG CTTTCGGCCG CGACGGGTGT GGAGCGGGGT ATTCGCCGCC TTTCGGAATT CAACATGGCG CTGGCGCTGC TCCTGTTGCT TTTCGTGCTG TTCGTGGGCG AGACGACCTT CCTGCTCAAT GCGCTGGTGA TGAATATCGG GGATTATCTT TCCGACTTCG TCAGCCTTTC CTTCAACACC TATGCGTTTG ACCCGCCTGT CGACTGGCTG AATGCGTGGA CGGTCTTTTT CTGGGCGTGG TGGATTGCAT GGGGACCCTT TGTCGGGCTC TTTCTTGCCC GCATTTCGCG CGGCCGCACC ATTCGCCAAT TTGTGGCCGG CACGCTGATC CTGCCGCTCG TCTTCATGAT GGGGTGGATG TCGATCATGG GGAACAGCGC CATCGAACTT GTGATGTCCG GTGCGACAGA GTTCGGTGAT GAGGCGATGG CCAATCCAGG TTCCGCGATC TACCTGTTCA TGCAGAGCCT GCCATTAGCC ACGGTTACGA CCATCGTCGT TACGCTTCTC GGCATCGTCT TTTTCATCAC TTCGGGTGAC TCAGGCTCGC TGGTGCTTTC GAACTTCACG TCGACCCTCA AGGACGTCAA TTCCGATGCG CCGGTCTGGA TGCGGGTTCT GTGGGCGACC ATTATCGGCG TGCTGACGCT GGCGCTGCTC CTTGCAGGGG GGCTTGAGGC GCTGCAGAGC ACGGTCGTCA TCATGGGGCT GCCATTCTCC ATCGTGCTGT TCTTGATGAT GCTGGGCCTC TTCAGGGCGC TCAGGGTCGA GGGCATGAAG GAAGACAGCC ATCGCGCCAG TCTTTCCGGC TACCTCTCCG GCAGGATCGG CGCGCCTGCG TCCAACTGGC GGCAGCGGAT TGCGCGGGCG ACGAGCTTCC CGACGTTGGC GCAGGTACGG CGCTTCATGC GGGACGCCGT GAGGCCGGCG ATGGAAGAGA TCCGGGAAAC GCTTGAAAAG CGGGGATTTC CGGCCCGGAT CGTCGAGGGC GAGGGGGACG ATGGCTGCCT GTCGCTCAAT GTCGCAATGG CCGACGACCA GGACTTCACC TACGAGGTCT GGCCGGTATG CGGCACGATG CCTGCCTTCG CGGTACGGCC GCAACAGACG GCTTCGGAGT ATTACCGCGC CGAGGTGCAT CTCTTCGAGG GCAGCCAGGG CTACGACCTG ATGGGCTACA CGAAGGAGCA AGTGATCGAG GACATCCTCG ATCAGTTCGA GCGGCACATG CATTTCCTTC ATACGCAGCG CGAGGCGCCG GGCGGGGCAA CCCGGATGCC GGACGACAGC ACCAAGGGGC CGGACTGA
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Protein sequence | MSDVTDGAGT KDREDRINPA VFYTSAVGIA LFAIWTMFFI DSANFVINSV LAWISDVFGW FYFVAVVLYL VFVIGIGLSR FGKVRLGPDH ARPEFNAITW AAMLFAAGIG IDLLFFCVSE PVTQFLAPPE GEGSTVEAAR HAMQLTFLHW GLSGWGVYTL VGMSLAYFSY RHGLPLTIRS ALFPIFGQRI YGVIGHTVDI AAVIGTVFGI ATSLGIGIIQ LNYGLEHMFG IPQSTLTQGA LVILIIVFAA LSAATGVERG IRRLSEFNMA LALLLLLFVL FVGETTFLLN ALVMNIGDYL SDFVSLSFNT YAFDPPVDWL NAWTVFFWAW WIAWGPFVGL FLARISRGRT IRQFVAGTLI LPLVFMMGWM SIMGNSAIEL VMSGATEFGD EAMANPGSAI YLFMQSLPLA TVTTIVVTLL GIVFFITSGD SGSLVLSNFT STLKDVNSDA PVWMRVLWAT IIGVLTLALL LAGGLEALQS TVVIMGLPFS IVLFLMMLGL FRALRVEGMK EDSHRASLSG YLSGRIGAPA SNWRQRIARA TSFPTLAQVR RFMRDAVRPA MEEIRETLEK RGFPARIVEG EGDDGCLSLN VAMADDQDFT YEVWPVCGTM PAFAVRPQQT ASEYYRAEVH LFEGSQGYDL MGYTKEQVIE DILDQFERHM HFLHTQREAP GGATRMPDDS TKGPD
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