| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2581 |
|---|
| Symbol | |
|---|
| ID | 5454335 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 2785580 |
|---|
| End bp | 2786368 |
|---|
| Gene Length | 789 bp |
|---|
| Protein Length | 262 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640878158 |
|---|
| Product | RNA methyltransferase |
|---|
| Protein accession | YP_001413847 |
|---|
| Protein GI | 154253023 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0565] rRNA methylase |
|---|
| TIGRFAM ID | [TIGR00050] RNA methyltransferase, TrmH family, group 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.0271019 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 56 |
|---|
| Fosmid unclonability p-value | 0.93463 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGGCA CGGATCAAAC CAGGAAAGAC GAGGCGCTCC GGGAAGCAGG GCCTGCGGTG
ATTCTCGTGG CGCCGCAGCT CGGCGAGAAT ATCGGTACGG CCGCGCGCGC CATGCTGAAT
TTCGGGCTCA CCGACCTGCG CCTCGTGCGG CCGCGCGATG GCTGGCCGAA CGAGCGTGCC
CGCGCGGCGG CTTCGGGCGC GGACGAGGTG ATAGACGGGG CGCGGCTTTT CGCCACCACG
GCAGAGGCCA TCGCGGATCT CGATTATGTC ATTGCGACGA CAGCCCGCTC CCGTGACATG
GTGAAGCCGA TCCTGACGCC GGAGACGGCG GCTACTCAGA TGCGCGTGGC CTTCGGCGCG
GGCGGGCGTG CCGGGCTCCT CTTCGGGCCG GAGCGCACGG GGCTCGAGAA TGACGACATT
GTCCTTGCCG ATGCGCTGAT GATGGTGCCT GTCAATCCCG CCTTCGCCTC GCTCAATCTC
GCGCAATGCG TATTGCTGAT GTCCTATGAG TGGCACAAGG CGGGTGACGC TACGGAAGCC
GCGCGGATCG AATATCCGCA GACGCGGCCC GCCACCAAGG AGGAGCTTGT CGGCTTCTTC
CATCACCTCG AGGGCGAGCT TGACCGCTTC GGTTTCCTGA AGCCGCCGGA GAAGCGGCCC
TCGATGATCC GGAACCTGCG CAACATGTTC CAGCGCGCGG TCCTCACCGA GCAAGAGGTC
CGCACCTTGC GCGGTGTCGT CGCGGCGCTG ACGCGGCGCT ATCCGAAAGG CGAGGGGCCG
CCGGACTGA
|
|---|
| Protein sequence | MAGTDQTRKD EALREAGPAV ILVAPQLGEN IGTAARAMLN FGLTDLRLVR PRDGWPNERA
RAAASGADEV IDGARLFATT AEAIADLDYV IATTARSRDM VKPILTPETA ATQMRVAFGA
GGRAGLLFGP ERTGLENDDI VLADALMMVP VNPAFASLNL AQCVLLMSYE WHKAGDATEA
ARIEYPQTRP ATKEELVGFF HHLEGELDRF GFLKPPEKRP SMIRNLRNMF QRAVLTEQEV
RTLRGVVAAL TRRYPKGEGP PD
|
|---|
| |