| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2580 |
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| Symbol | |
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| ID | 5454350 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 2784189 |
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| End bp | 2785412 |
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| Gene Length | 1224 bp |
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| Protein Length | 407 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640878157 |
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| Product | isocitrate dehydrogenase |
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| Protein accession | YP_001413846 |
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| Protein GI | 154253022 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0538] Isocitrate dehydrogenases |
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| TIGRFAM ID | [TIGR00127] isocitrate dehydrogenase, NADP-dependent, eukaryotic type |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0101084 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 0.494779 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGAAGA TCAAAGTCGC AAACCCCGTG GTCGATCTCG ATGGCGATGA GATGACCCGG
ATCATCTGGC AGATGATCAA GGACAAGCTG ATCTTCCCCT ATCTGGATCT CGACATCGAC
TATTACGACC TCGGCATGGA GCACCGCGAC GCCACCGACG ACAAGGTGAC GGTGGAGAGC
GCGGAAGCGA TCAAGAAATA CGGCGTCGGC GTCAAATGCG CGACCATCAC GCCGGATGAG
GCGCGCGTCG AGGAATTCAA GCTGAAGAAG ATGTGGAAGT CGCCCAACGG CACCATCCGC
AACATTCTCG GCGGCACCGT CTTCCGCGAG CCCATCATCT GCCGCAACAT TCCGCGCCTC
GTGCCCGGCT GGACGGAGCC GATCGTGATC GGCCGTCATG CCTTCGGCGA CCAGTACCGC
GCCACCGACA TTCTGATCCC CGGCAAGGGC AAGCTCACCA TGAAGTGGGT GTCCGAGGAC
GGCAAGGACA CGATCGAGGA AGAGATTTTC GATTTCCCCT CCGCCGGCGT CGCCATGGGG
ATGTACAATC TCGACGACAG CATCCGCGAC TTCGCCCGCG CCTGCATGAA GTTCGGCCTC
GCCAGGAAGT ATCCGGTCTA CCTCTCGACC AAGAACACGA TCCTGAAAAC CTATGACGGC
CGCTTCAAGA ACCTTTTCCA GGAAATCTAC GAGAAGGAAT TCAAGGCCGA TTTCGAGGCC
GCGAAGATCA CCTATGAGCA CCGCCTGATC GACGACATGG TGGCCTCGGC GATGAAGTGG
TCCGGCGGCT ATGTCTGGGC GTGCAAGAAC TACGATGGCG ACGTGCAGTC GGACTCGGTG
GCGCAGGGCT TCGGCTCGCT CGGCCTGATG ACATCCGTGC TGCTGACGCC GGACGGCAAG
ATCATGGAAG CAGAAGCCGC GCATGGCACG GTGACGCGCC ACTTCCGCGC CCATCAGCGC
GGCGAGGAAA CCTCGACCAA CTCGATCGCC TCGATCTTCG CCTGGACGCG CGGGCTCACG
CATCGCGCCA AGCTGGACGG CAATGACGAA TTGGCGAAGT TCGCCCAGAC GCTCGAAAAG
GTCTGCGTTT CGACAGTGGA AAGCGGCCAC ATGACGAAGG ACCTGGCGCT GCTCGTCGGC
TCCGAACAGT CATGGCTGTC GACGGAAGGC TTCCTCGACA AGGTCGCCGC CAATCTCGAC
AAGGCGCTCG CGAAACAGGC GTAA
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| Protein sequence | MPKIKVANPV VDLDGDEMTR IIWQMIKDKL IFPYLDLDID YYDLGMEHRD ATDDKVTVES
AEAIKKYGVG VKCATITPDE ARVEEFKLKK MWKSPNGTIR NILGGTVFRE PIICRNIPRL
VPGWTEPIVI GRHAFGDQYR ATDILIPGKG KLTMKWVSED GKDTIEEEIF DFPSAGVAMG
MYNLDDSIRD FARACMKFGL ARKYPVYLST KNTILKTYDG RFKNLFQEIY EKEFKADFEA
AKITYEHRLI DDMVASAMKW SGGYVWACKN YDGDVQSDSV AQGFGSLGLM TSVLLTPDGK
IMEAEAAHGT VTRHFRAHQR GEETSTNSIA SIFAWTRGLT HRAKLDGNDE LAKFAQTLEK
VCVSTVESGH MTKDLALLVG SEQSWLSTEG FLDKVAANLD KALAKQA
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