| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2579 |
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| Symbol | alaS |
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| ID | 5454726 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 2780805 |
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| End bp | 2783546 |
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| Gene Length | 2742 bp |
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| Protein Length | 913 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640878156 |
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| Product | alanyl-tRNA synthetase |
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| Protein accession | YP_001413845 |
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| Protein GI | 154253021 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0013] Alanyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.159446 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 0.328441 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGAAACG GGCGGATTGC GGGCCTCGTC CCTTCCGCCC CTTATCCCGA AAACGAGCGG
AAAATGGCCG GCGTCAACGA GATCAGAAGC AAGTATCTGG AATTTTTCCG GGCGCAGGGC
CATGAGGTCG TGGCCTCCGG TCCCCTTGTG CCGAATAACG ACCCGACGCT GCTTTTCACC
AATGCCGGCA TGGTGCCGTT CAAGAATGTC TTCACCGGTC AGGAGACGCG GCCCTACAAG
CGCGCGGCGA GCTCGCAGAA ATGCGTGCGC GCGGGCGGCA AGCATAATGA CCTCGACAAT
GTCGGCTATA CGGCGCGCCA TCACACCTTC TTCGAGATGC TCGGCAACTT CTCCTTCGGC
GACTACTACA AGGCCGAGGC GATCGAGTTC GCCTGGGATC TCATCACGAA GGAACTGGCG
CTGCCCGAAA GCCGCCTCAT GGTCACCATC TATGAGGATG ATGACGAGGC GCACGGGCTC
TGGAAGAAGA TCACCGGCCT GAGCGACGAC AAGATCGTCC GCCTCGGCGC CAAGTCGAAT
TTCTGGCAGA TGGGCGATAC CGGTCCCTGC GGCCCGAATT CGGAAATCTT CTACGATCAC
GGCGACAAGA TCCCCGGCGG CCCTCCCGGC AGCCCGGACG AGGATGGCGA CCGCTTCATC
GAAATCTGGA ACCTCGTCTT CATGCAGTAT GAGCAGCATG AAGACGGCTC GCGCACGCGG
CTGCCCAAGC CCTCGATCGA CACCGGCATG GGCCTCGAGC GCATCGCCGC CGTGTTGCAG
GGCACGCATG ACAATTATTC GACCGACCTG ATGCGCTCGC TCATCGTCGC CTCCGCCGAG
GCCTCGAAAA GCGATCCGGA CGGGCCGCAC GCCGTCAGCC ACCGCGTCAT CGCGGATCAT
CTCCGTTCAA GCTCGTTCCT CCTCGCCGAC GGCGTGATGC CGTCGAACGA AGGCCGCGGC
TATGTGCTTC GCCGCATCAT GCGCCGCGCC ATGCGCCACG CGCAGCTCGT CGGCGTTGCC
GAGCCGCTGA TGTGGCGGCT CGTTCCGGCG CTTGTCCGCC AGATGGGCGA TGCCTATCCC
GAATTGCGGC GCGCCGAGGC GCTCGTCACC GAAACGCTGC GGCTCGAAGA AACGCGCTTC
CGCGAAACGC TGACGCGCGG GCTGAAGCTG CTCGACGAGG AAATCGAAAG CCTCGGCGGC
AAGGGCGTGC TGGCGGGCGA GGTCGCCTTC AAGCTCTACG ACACTTACGG TTTCCCCCTC
GATCTCACGC AGGATGCGCT GCGCTCGCGC GGCATGAGCG TCGATCAGAC CGGCTTCGAC
GAGGCAATGG CGAAGCAGCG GCAGGATGCG CGCGCCGCCT GGTCGGGTTC CGGCGAGAAG
GCAACGGAAG CTGTCTGGTT CGAGCTCCGC GACAAGGTCG GCGCCACGGA ATTCCTCGGC
TATGAAAGCG AGATTGCGGA AGGCAAGGTC GTCGCGCTCC TCGTGGATGG CCAGCCTGTC
GACAAGGTGG AGGCCGGCAC GGACGCCGCC CTCATCACCA ACCAGACACC GTTCTATGCG
GAGTCCGGCG GCCAGGTCGG CGACACCGGC ATCGTCTTCT CGGCCGATGG CGCGGAGTTC
CCCGTCATCG ACACGATGAA GAAGCTTGGT GCGCTGCATG TCCATATCGG CAAGCTCGCG
CGCGGCACGC TGAAGCTCGG CGACATCGTC GAGATGAAGG TCGACAAATC CCTGCGCGAT
GCAACGCGCG CCAATCACTC CGCAACCCAT CTGCTGCATG AGGCGCTGCG CCGCGTGCTC
GGCGATCACG TGACGCAGAA GGGCTCGATG GTCGGGCCGG AGCGGCTGCG CTTCGACTTC
AGCCATCCGA AGCCGATGAC GCCGGAAGAA ATTTCCGAGG TCGAGACCAT CGTCAATCGC
GTGATCCGCC AGAACGCGGA AGTGACGACG CGGCTGATGA CGCCGGAAGA TGCGATCGCG
GCGGGCGCGC TGGCGCTTTT CGGCGAAAAA TATGGCGAGG AAGTGCGTGT GCTGGCCATG
GGGCTCGATG ACGAAAACCC CAACGGCACC TATTCGGTCG AGCTTTGCGG CGGTACGCAT
GTGCGCCGCG TCGGCGACAT CGCGATCTTC AAGATCGTCA GCGAAAGTGC GGTCGCGTCA
GGCATCCGCC GCATTGAGGC GCTGACGGGC GAGGGCGCTC GCGCCTATCT CGTCGCACAG
GACAGGATCG CGAAGGAAGC GGCAAGCGCG CTTCGCATTT CGACGGAAGA CCTGCCGGCC
CGCGTCGTCT CGCTGATGGA AGAGCGCAAA AGGCTGGAGC GCGAGCTGGC GCAGGCGAAG
AAGCAGCTTG CCATGTCCGG CGGCGGCGGT TCCGGCGGGC AGGAATCACC AGTGCAGGAA
TTCGGCGGCG TGAAGCTCAT TGCGCGCAAG CTTGAAGGCG TGAACCCGAA GGATCTGCGC
GGCCTCATCG ACGAGAGCAA AAAGCAGCTC GGCTCCGGCG TCGTGGTGCT TGTCGCAATT
TCGGAAGACG GCAAGGGCGC CATCGCCGTC GGCGTCACCG ACGATCTCAC CTCGCGCTAC
AACGCGGTCG AACTCGTGAA GGCGGGTGCG GCGGCAATGG GCGGCAAGGG CGGCGGCGGA
AGGCCCGACA TGGCGCAGGC CGGCGGCCCG GAAGCCGAAA AGGCCGACGC CGCGCTCGAC
GCGGTGAAGG CGGCGGTCGG CGAACTTGCC GGTGCTGCGT AG
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| Protein sequence | MRNGRIAGLV PSAPYPENER KMAGVNEIRS KYLEFFRAQG HEVVASGPLV PNNDPTLLFT
NAGMVPFKNV FTGQETRPYK RAASSQKCVR AGGKHNDLDN VGYTARHHTF FEMLGNFSFG
DYYKAEAIEF AWDLITKELA LPESRLMVTI YEDDDEAHGL WKKITGLSDD KIVRLGAKSN
FWQMGDTGPC GPNSEIFYDH GDKIPGGPPG SPDEDGDRFI EIWNLVFMQY EQHEDGSRTR
LPKPSIDTGM GLERIAAVLQ GTHDNYSTDL MRSLIVASAE ASKSDPDGPH AVSHRVIADH
LRSSSFLLAD GVMPSNEGRG YVLRRIMRRA MRHAQLVGVA EPLMWRLVPA LVRQMGDAYP
ELRRAEALVT ETLRLEETRF RETLTRGLKL LDEEIESLGG KGVLAGEVAF KLYDTYGFPL
DLTQDALRSR GMSVDQTGFD EAMAKQRQDA RAAWSGSGEK ATEAVWFELR DKVGATEFLG
YESEIAEGKV VALLVDGQPV DKVEAGTDAA LITNQTPFYA ESGGQVGDTG IVFSADGAEF
PVIDTMKKLG ALHVHIGKLA RGTLKLGDIV EMKVDKSLRD ATRANHSATH LLHEALRRVL
GDHVTQKGSM VGPERLRFDF SHPKPMTPEE ISEVETIVNR VIRQNAEVTT RLMTPEDAIA
AGALALFGEK YGEEVRVLAM GLDDENPNGT YSVELCGGTH VRRVGDIAIF KIVSESAVAS
GIRRIEALTG EGARAYLVAQ DRIAKEAASA LRISTEDLPA RVVSLMEERK RLERELAQAK
KQLAMSGGGG SGGQESPVQE FGGVKLIARK LEGVNPKDLR GLIDESKKQL GSGVVVLVAI
SEDGKGAIAV GVTDDLTSRY NAVELVKAGA AAMGGKGGGG RPDMAQAGGP EAEKADAALD
AVKAAVGELA GAA
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