| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2531 |
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| Symbol | |
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| ID | 5456012 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 2730261 |
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| End bp | 2733518 |
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| Gene Length | 3258 bp |
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| Protein Length | 1085 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640878108 |
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| Product | DNA polymerase III, alpha subunit |
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| Protein accession | YP_001413797 |
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| Protein GI | 154252973 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 0.465943 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGCTT CGTTCGCGGA ACTTGCGGTT GCCACTAATT TCAGTTTTCT GCGCGGCGCT
TCACATGCCG AAGAACTGGT TCTTGCGGCG AAAGCCCAGG GACTTTCGGC AATCGGTATT
GCCGACAGGA ACACACTGGC CGGTATCGTG CGGGCGCATG CAGCTGCGAA AGAAGAAAAG
ATACGCCTTC TCGTCGGTGC CCGATTGGTG CTGCAGGATG GATTCGAGGT TATTGCCTAT
CCTCAGGACC GCGCTGCCTA TGGAAGGCTG ACGCGGCTTC TGACGCTTGG CAACAGGCGG
GCGCCGAAAG GGGAATGCTT TCTTGCCATG AGCGATCTTC TGGAGCATGG CGAAGGCCAC
TGTTTCATTG CCATGCCGCC CCCCGTTCCG GACGAGGATT TTGAGGCGAA GCTGAGGCTG
ATAGCGGAGA CGTTCCCGGA TTCGATCTGG CTTGGTCTCA CACCTTTTTA CCGGGCCGAT
GATGTGAGGC GGCATCATGT GCTGGAGCTA CTGGCGCGGA AAACCCAGGT GCCATTGGTG
GCGACCAATG ATGTTCTTTA TCATTCACCG GACAGGAAAC CGCTTCATGA TGTTGTTACA
TGCGTTCGAG AGCATTGCAC ATTGAAGGAA GCCGGGTTTC GGCTCGCGGC GAATGCAGAA
CGGCATGTGA AATCGCCAGA AGAAATGTCG CGTCTTCTGG CGCATGTGCC GAAGGCTCTT
TCCGCCACGT TCGATATTGT TGAACGGTGT TCTTTTTCCC TTGAAGAGCT CCGCTATGAA
TATCCAGCCG ACAATTTTTC CGAACATGAA ACACCTCAGG AGTTGCTTGT CCGGCTGACA
TGGGAAGGGG CGCGCGATTT TTTCTCGCAA GGTGTGGATG ACAAGATACG GAAGGCCATC
GACCATGAGC TGAAGCTTAT AGAGGAAATG GCCTATGCGC CCTATTTCCT GACCGTTCAT
GATATTGTCA GATATGCGCG TAGTCAGAAT ATTCTTTGTC AGGGACGAGG CTCCGCAGCC
AATTCCACTG TTTGTTTTTG CCTGGGTATT ACCTCCGTCA ATCCTTCCGA GATAGACTTG
CTGTTCGAGC GATTTATCTC AAAAGACCGT AATGAACCGC CCGACATCGA TGTCGATTTC
GAGCATGAAC GGCGCGAAGA GGTAATCCAG TACATTTATG AAAAATATGG GCGACACCGC
GCGGGGATTG CCGCGACCGT GATTTCCTAT CGGTCGCGAA GCGCCATTCG CGATGTGGGC
AAGGTATTCG GTCTCTCGGA AGATGTCATA AGCGCCTTGT CGCGTTCTAC CTGGGGCTGG
TCGAGCAGTG GTGTCTCGCA AAAGGATGCA CGCGAAATAG GCCTCGATCC GTCCGATCGA
CGGCTTCGGC TTGCGCTAAA ACTTGCCGGA GAGCTGATTG GATTCCCCCG CCATCTTTCG
CAGCATGTCG GCGGATTCGT TATTACAAAA GGTCCGCTGG ATGAAGTCGT GCCGATACAG
AATGCTGCAA TGGATGACCG TACTTTCGTC GAATGGGACA AGGACGATCT CGACACGCTC
GGCATCCTGA AAATCGATGT CCTGGCGTTG GGAATGCTCA CCTGCATCCG GAAGGCTTTC
GAGTTCATCG AGAAGCATTA CGCCAGACCA ATGACCCTCG CCGGTGTGCC GCAGGGCGAC
AAGGCAGTCT ATGACATGCT TTGCGAAGCG GATGCCATCG GCGTATTTCA GGTCGAAAGC
CGGGCGCAGA TGTCGATGCT GCCACGCCTG AAGCCCCGGA ATTTCTACGA CCTTGTCGTC
GAGGTCGCGA TCGTGCGTCC GGGGCCGATA CAGGGTGACA TGGTGCATCC CTATTTGCGG
AGGCGGAGCG GAAAGGAGGA AATCACATAT CCTTCTTCTG TCCTGGAGGA AGTTCTTGAA
AGGACATACG GCGTGCCGCT CTTTCAGGAA CAGGCGATGA AGATCGCTAT CGTCGCTGCC
GGCTTTACAC CCGGTGAGTC GGACCAGCTA CGCCGTGCGA TGGCAACCTT CCGCAAGTCC
GGAACAATCG GCATGTATCG TGACAAGTTC ATCGCAGGAA TGCTCAAGAA TGGCTACAAA
CAAGATTTTG CAGAGCGCTG CTTCAAGCAG ATCGAAGGAT TTGCCGATTA CGGTTTTCCG
GAAAGCCACG CAGCCAGCTT TGCGCGTCTG GCTTATATTT CTGCATGGCT CAAGTATCAC
TATCCGGATG CATTCTGCGC GGCTCTTCTG AATTCTCAAC CAATGGGTTT CTATGCGCCG
GCGCAGCTTG TTCGCGATGC AAGCGAGCAT GGCGTGGAGG TGCGACCCGT CGATGTGAAC
CATAGCGACT GGGACTGCAC ACTTGAGAAG ACAACGGGAG GAAAATGCGC TGTCCGGCTC
GGTTTGCGGC AGGTGAAAGG CGTGCAGATT GCAACAGGGG AAACGATCGA AGGGAAGCGA
GGAAAGGGGT TCGATTCCAT CCGACATTTA TGGCTGAAGA CGGGACTTGG GCCACGGGTC
ATCGAGAAGC TTGCCGATGC CGATGCATTC AGATCCATCG GCTTCGACCG GCGGGAGGCG
CTTTGGGCAG TTCGCGGGCT GGGGGGATAC GGGAACGGAC AGAACGGCAC AACGCCGGCG
GCTTTGCCAC TCTTTGCCAC TCTGGAAGAG GGAGGTCTGC AGGTTGAAGA AGACGTATCC
TTACCGGCTA TGCCGCCCGG CGAGCATGTC GTGCTCGATT ACGCAATGCT CCGGCTTTCT
CTCAAGGCGC ATCCGATTTC CTTTCTCCGC CCTCGTTTTG CCGCTTGCGG TGCAATATCC
AGCCGGCAAT TGAAGGAAAC GGAAGCGGGC AAGCGTATAA GCATTGCAGG TCTTGTGCTC
GTGCGTCAGA GGCCGGGAAC TGCCAGCGGC GTTATTTTCG CGACGCTTGA GGACGAGACA
GGCATCGCCA ATATCATCAT ATGGCCCAAG CTTTACGAAA AACGGCGCCG GATCGTTCTT
ACGTCACGTC TTCTGTTCGT ACGGGGGCGG ATACAGAAGG AAGGCATCGT GATCCATATC
GTGGCGGATG ATCTGGAAGA CTGGACACAT GAACTTGCAC ATCTGTCTTC AGAAGCGGAT
ATCGGCGAAG CTTTGATTTC CCCGGCTGAC GGGGTGAAGC ATCCCGGACA AGACCCGCGC
GATGGCAACC ATACGCGTGA GGAACAGAAA AGAATGCGCG CCGCCCGCTT TGTGCCGAAG
AGCCGCGATT TTCACTGA
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| Protein sequence | MSASFAELAV ATNFSFLRGA SHAEELVLAA KAQGLSAIGI ADRNTLAGIV RAHAAAKEEK
IRLLVGARLV LQDGFEVIAY PQDRAAYGRL TRLLTLGNRR APKGECFLAM SDLLEHGEGH
CFIAMPPPVP DEDFEAKLRL IAETFPDSIW LGLTPFYRAD DVRRHHVLEL LARKTQVPLV
ATNDVLYHSP DRKPLHDVVT CVREHCTLKE AGFRLAANAE RHVKSPEEMS RLLAHVPKAL
SATFDIVERC SFSLEELRYE YPADNFSEHE TPQELLVRLT WEGARDFFSQ GVDDKIRKAI
DHELKLIEEM AYAPYFLTVH DIVRYARSQN ILCQGRGSAA NSTVCFCLGI TSVNPSEIDL
LFERFISKDR NEPPDIDVDF EHERREEVIQ YIYEKYGRHR AGIAATVISY RSRSAIRDVG
KVFGLSEDVI SALSRSTWGW SSSGVSQKDA REIGLDPSDR RLRLALKLAG ELIGFPRHLS
QHVGGFVITK GPLDEVVPIQ NAAMDDRTFV EWDKDDLDTL GILKIDVLAL GMLTCIRKAF
EFIEKHYARP MTLAGVPQGD KAVYDMLCEA DAIGVFQVES RAQMSMLPRL KPRNFYDLVV
EVAIVRPGPI QGDMVHPYLR RRSGKEEITY PSSVLEEVLE RTYGVPLFQE QAMKIAIVAA
GFTPGESDQL RRAMATFRKS GTIGMYRDKF IAGMLKNGYK QDFAERCFKQ IEGFADYGFP
ESHAASFARL AYISAWLKYH YPDAFCAALL NSQPMGFYAP AQLVRDASEH GVEVRPVDVN
HSDWDCTLEK TTGGKCAVRL GLRQVKGVQI ATGETIEGKR GKGFDSIRHL WLKTGLGPRV
IEKLADADAF RSIGFDRREA LWAVRGLGGY GNGQNGTTPA ALPLFATLEE GGLQVEEDVS
LPAMPPGEHV VLDYAMLRLS LKAHPISFLR PRFAACGAIS SRQLKETEAG KRISIAGLVL
VRQRPGTASG VIFATLEDET GIANIIIWPK LYEKRRRIVL TSRLLFVRGR IQKEGIVIHI
VADDLEDWTH ELAHLSSEAD IGEALISPAD GVKHPGQDPR DGNHTREEQK RMRAARFVPK
SRDFH
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