| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2485 |
|---|
| Symbol | |
|---|
| ID | 5455177 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 2687160 |
|---|
| End bp | 2688506 |
|---|
| Gene Length | 1347 bp |
|---|
| Protein Length | 448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640878062 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001413751 |
|---|
| Protein GI | 154252927 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.487867 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 0.156887 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACTG TAACTTTTGC GGATCTTGGC GTTGCCGAGC CGCTGTGCCG CGCCCTTGCT
GCCAACAACT ACACCAACCC GACGCCGATT CAGGCGCAAG CCATTCCCGC CCTGCTGGAA
GGCCGCGACC TGCTGGGCCT CGCCCAGACC GGCACAGGCA AGACCGCCGC TTTCGCGCTG
CCAATACTCC AGATACTTGC CGCCGCCAAC GAGAAGCGCC AACCCAAGGA AGCCCGCGCG
CTCATTCTCG CGCCGACGCG CGAACTCGCG GTTCAGATCA GCCAGAGCAT TGAAAGCTAT
GGCAAGAATT TCAAGCTGCG CCACACGGTC ATCTTCGGCG GCGTGAACCA GTTTCGCCAG
GTAAAGGCGA TGACGGCCGG CGTAGACATT GTGGTGGCGA CACCGGGCCG CCTGCTCGAC
CTCATGAACC AGAAGCACGT CAATCTGAGC CGCACGTCCC TTCTCGTGCT CGACGAAGCT
GACCGCATGC TGGACATGGG CTTCATCCGC GACGTGCGGA AGATCATTGC CGCGATGCCG
CGTCAGCGCC AGTCGCTGCT CTTCTCGGCG ACGATGCCTT CCAGCATCCA GCATCTTGCG
GACGAGATCC TTCGCGAGCC CGTACGTGTC GAAGTGACGC CGGAAGTCGT GACGGTCGAC
AAGATCGACC AGCGGGTTCT CCATGTGGAC GGCAAGCGCA AGCGCGAGCT TCTGGCGAAG
CTGCTCGACA ATTCGGAGCT TTCGCGCGTC ATCGTCTTCA CGCGCACCAA ACATTGCGCC
AACCGCGTGA GCGAACAGCT GGACAAGTCT GGCGTGCTCT CGGAAGCCAT TCACGGCAAC
AAGTCGCAGG GCGCACGCCA GCGCGCGCTC GACATGTTCC GCAACGGCAA GGCACGCGTC
CTTGTCGCGA CAGACATCGC CGCGCGCGGC ATCGACGTCT CGGACATCAC GCATGTCATC
AATTACGAGC TGCCGAACGA GCCGGAAAGC TATGTTCACC GCATCGGCCG TACGGCCCGC
GCGGGCAAGA GCGGCATTGC CCTCTCCTTT TGCGATGCTT CCGAACGTTC GCACCTTCGC
AGCATCGAGA AGCTGACGAA ACGCCCGTTG ACGGTTATGG ACACCACGGA ATGGCTCGGC
GAGCAGGTAG CCGTTCCCGC CGGTGAACCC ATGGCCAAAC GTGCAGGCAA TCGCAATGGC
GGCGGCCCCC GCAACGGCAA CAGCAATCGC CAGCCGGGCA AACCGCGCCG GTTTGGCGGC
AAGCCCGGTG GTGGCGCCGG CAATCGCGGC CAGAAGCCCG GTCAAAAGGG TGGTCAGCAG
AGTCGGCGTC AGTCGACCGC TTCCTGA
|
|---|
| Protein sequence | MTTVTFADLG VAEPLCRALA ANNYTNPTPI QAQAIPALLE GRDLLGLAQT GTGKTAAFAL
PILQILAAAN EKRQPKEARA LILAPTRELA VQISQSIESY GKNFKLRHTV IFGGVNQFRQ
VKAMTAGVDI VVATPGRLLD LMNQKHVNLS RTSLLVLDEA DRMLDMGFIR DVRKIIAAMP
RQRQSLLFSA TMPSSIQHLA DEILREPVRV EVTPEVVTVD KIDQRVLHVD GKRKRELLAK
LLDNSELSRV IVFTRTKHCA NRVSEQLDKS GVLSEAIHGN KSQGARQRAL DMFRNGKARV
LVATDIAARG IDVSDITHVI NYELPNEPES YVHRIGRTAR AGKSGIALSF CDASERSHLR
SIEKLTKRPL TVMDTTEWLG EQVAVPAGEP MAKRAGNRNG GGPRNGNSNR QPGKPRRFGG
KPGGGAGNRG QKPGQKGGQQ SRRQSTAS
|
|---|
| |