| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2432 |
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| Symbol | |
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| ID | 5454003 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 2628800 |
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| End bp | 2630932 |
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| Gene Length | 2133 bp |
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| Protein Length | 710 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640878008 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_001413698 |
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| Protein GI | 154252874 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 60 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGCGA AACGGAAAAG CTTCGATGAG GCGCTGGCGC AGAAGGATGT CGATCATCTG
ACGCTGGAAG AGGCGCCGGA AGAGCTTGAG CGGCTTGCCG CCGAGATCGA GAAGCACGAC
AAGCTTTACT ACCAGAAGGA TGCGCCGCGT ATTTCCGATG CGGAATATGA CACGCTGCGC
CGCCGCAACG AGGCCATCGA GGCGCGCTAT CCCGAGCTTG TGCGCGAGGA CAGCCCGAGC
CACCGCGTCG GCGCGCAGCC GGCGGACGGC TTCGGCAAGG TCGTGCACAA GGTGCCGATG
CTGTCGCTGT CGAATGCCTT CGACGATGAA GATGTGCGCG ACTTTGCCTT GCGCATCAGG
CGCTTTCTCA ACCTGAAGGA AGAAGACATC CTGCCCATCA CGGCGGAGCC GAAGATCGAC
GGCTTGTCGG CGGCGCTGCG CTACGAGAAG GGCAAGTTCG TGATGGGCGC AACGCGCGGC
GATGGGCGCG AGGGCGAGAA CGTTACGGAG AACCTGAAGA CCATCGGCGA CATTCCGGCG
GAGCTGAAGG GAAAGAACAT TCCCGATGTC GTGGAAGTGC GCGGCGAAGT CTATATGAGC
CATGAGGATT TCGCAGCGTT GAACGAGCGG CAGCGCGAGG CGGGCAAGCC CGTCTTCGCC
AATCCGCGCA ACGCGGCGGC AGGCTCGCTC CGCCAGCTCG ATGCAAAGAT CACCGCCAGC
AGGCCGCTCC GTTTCTTCGC CTATACATGG GGCGAAATGT CGGACCTTCC GGCGGATACG
CAATCCGGCG TCATGGATGC GTTCCGCAAA TGGGGCTTCA CGGTCAATCC GCTGTTCGGC
CGCTGCGATA CCGTGGAAGC ATTGATCGAC TTCTATCACG ACATAGAAGA GCGCCGCGCG
ACGCTCGGAT ACGACATTGA CGGCGTGGTC TACAAGGTCG ACAGGCTCGA CTGGCAGAAC
CGCCTCGGCT TCGTCTCGCG TTCTCCGCGC TGGGCGCTGG CGCACAAGTT TCCGGCCGAG
CAGGCAATGA CAGTGCTGGA GAAGATCGAG ATCCAGGTCG GCCGCACCGG CGCGCTGACG
CCGGTCGCGC GCCTCACGCC GGTCACGGTC GGCGGCGTCG TGGTGTCGAA CGCGACGCTC
CACAATGCCG ACGAGATCGA GCGCCTCGGC GTGCGGCCGG GCGATACGGT GGTGGTGCAG
CGCGCGGGCG ATGTCATCCC GCAGATCGTG CGCGTGGTGG AGGATCGTCC GCGCGGGAAA
AAGAAGTTCG TGTTTCCCGA CACATGCCCC GAATGCGGCA GCCACGCCGT GCGCGAGGTG
AACCCGAAGA CGGGCAAGCT CGATGCCGTG GCCCGCTGCA CGGGCGGCCT CGTCTGCCCG
GCGCAGGCGG TGGAGCGGCT TCGTCACTTT GTATCTCGCA ATGCCTTCGA CATAGAAGGG
CTCGGCGAGA AGCAGATTGC CGCTTTCTTT GAGGACGGCC TCATCAAGAA GCCGGACGAC
ATCTTCACGC TGGCGGCGCG CGACGCGAAA AGCCTCAAGA AGCTGAAGGA CCGCGAAGGC
TGGGGCGCGA CATCCGCGCG AAAGCTTTTC GACGCCATCG ATGCGCGGCG CGAGGTGGAG
CTTGACCGTT TCATCTTCGG GCTCGGCATT CGCCATGTCG GCGAGACCAA TGCGCGGCTG
CTGGCGCGGA GCTACGGCAC GCTCGATCAT TTCGAGGAGC AGATGCGCGC GGCGGCAGAC
CGCGAGGACG AGGCCTATGC CGAGCTTCTC TCCATCGACG GGGTGGGCGA GGTGCTGGCG
GAGTCGATCG TGGATTTCTT CGCCGAAAAA CATAATCGCG AGGTGCTCGA CGGGCTGCGG
GAGGCAGGGG TAAAGGGCGT GCCGCTGCCG AAGCAGGAAA CCTCCTCCCC CGTCGCCGGC
AAGACCGTGG TCTTCACCGG CTCGCTCGAA AAGATGACGC GGTCCGAGGC CAAGGCGCGG
GCGGAGCAAC TGGGCGCCAA GGTGGCGGGC AGCGTTTCGG CGAAGACAGA CATTCTTGTG
GCCGGGGCGG ATGCAGGGTC GAAGCTCGCC AAGGCGCGGG AACTCGGCAT CGAGATCCTC
GATGAAGACC AATGGATCGA GCTGGCGGGC TGA
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| Protein sequence | MSAKRKSFDE ALAQKDVDHL TLEEAPEELE RLAAEIEKHD KLYYQKDAPR ISDAEYDTLR
RRNEAIEARY PELVREDSPS HRVGAQPADG FGKVVHKVPM LSLSNAFDDE DVRDFALRIR
RFLNLKEEDI LPITAEPKID GLSAALRYEK GKFVMGATRG DGREGENVTE NLKTIGDIPA
ELKGKNIPDV VEVRGEVYMS HEDFAALNER QREAGKPVFA NPRNAAAGSL RQLDAKITAS
RPLRFFAYTW GEMSDLPADT QSGVMDAFRK WGFTVNPLFG RCDTVEALID FYHDIEERRA
TLGYDIDGVV YKVDRLDWQN RLGFVSRSPR WALAHKFPAE QAMTVLEKIE IQVGRTGALT
PVARLTPVTV GGVVVSNATL HNADEIERLG VRPGDTVVVQ RAGDVIPQIV RVVEDRPRGK
KKFVFPDTCP ECGSHAVREV NPKTGKLDAV ARCTGGLVCP AQAVERLRHF VSRNAFDIEG
LGEKQIAAFF EDGLIKKPDD IFTLAARDAK SLKKLKDREG WGATSARKLF DAIDARREVE
LDRFIFGLGI RHVGETNARL LARSYGTLDH FEEQMRAAAD REDEAYAELL SIDGVGEVLA
ESIVDFFAEK HNREVLDGLR EAGVKGVPLP KQETSSPVAG KTVVFTGSLE KMTRSEAKAR
AEQLGAKVAG SVSAKTDILV AGADAGSKLA KARELGIEIL DEDQWIELAG
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