Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_2429 |
Symbol | lpxC |
ID | 5454742 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 2624980 |
End bp | 2625984 |
Gene Length | 1005 bp |
Protein Length | 334 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640878005 |
Product | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase |
Protein accession | YP_001413695 |
Protein GI | 154252871 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0774] UDP-3-O-acyl-N-acetylglucosamine deacetylase |
TIGRFAM ID | [TIGR00325] UDP-3-0-acyl N-acetylglucosamine deacetylase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.108142 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 65 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGTTCAGAG TGCAGAAATC GGAATTTGAA ACCATCATGC TGGAGAATGT CCGGCGGGAA CGGCGTATCC GCGCGATCGC CTTTCCGCAG AAGACGCTCG TGCGCCCCGT CGTGATCGAC GGCATCGGCC TGCACAGCGG CGCGGCGATC CACATGGTTC TGCATCCCGC CGAAGCCGAC CGTGGCGTCG TTTTCCGGCG CACCGATCTC GTGGCCCAGG GCCGCGAGGT TTCCGACATT CCCGCGACAT TCGATCATGT CGTCGATACG ACACTTTCCA CCGCCATCGG CAATGCCGCC GGCACCACCG TCAGCACGGT CGAACATCTG ATGTCCGCCT TCTCGGCGCT CGGCATCGAC AATGCGCTGG TGGAAATCGA TGGACCGGAA GTGCCGGTAC TCGACGGCAG CTCGGAAATC TTCATCGATG CGATCGAGGG CGTGGGTATC GAAAAGCTCG ATGCGCCGCG CAAGGCGATC CGCATCCTGA AGCCCGTTAT CGTCGAAGAT GGCGCGAAGC GCGCGGCCTT GCTGCCGGGC GATGGTTTCC GTGTGTCCTT CGAGATCGAT TTCGACAATC CGCTGATCGG CCGTCAGGCG CTTGAAGTGG ACCTGCATGA TGATTTCTTC GTCGAAGATA TCATGCGCGC CCGCACCTTC TGCCTGCGCC GCGACATCGA GGCGATGTGG GCGGCGGGTC TCGCCAAGGG CGGCTCGCTC GATAATGCGG TGGTCGTGGA TCAGGACCGT ATCCTCAATG AGGAAGGCCT GCGCTACGAA GATGAATTCG TGCGCCACAA GGTGCTGGAC GCCGTGGGCG ATCTGGCGCT GTCCGGCCGG CCGCTGATCG GCCGCTATGA AGGCTCGCGC GCCGGGCATG CCATGAACAA CCGCGTGCTG CGGGCGCTGA TGGCCGACCG TTCGGCCTGG GAAGTGGTGG ATTTCACGGA CGCTTCCTCT GCGGCCCATT CCGGCCCGGA ACTGGTGGCC ATCCCGGCCG ATTGA
|
Protein sequence | MFRVQKSEFE TIMLENVRRE RRIRAIAFPQ KTLVRPVVID GIGLHSGAAI HMVLHPAEAD RGVVFRRTDL VAQGREVSDI PATFDHVVDT TLSTAIGNAA GTTVSTVEHL MSAFSALGID NALVEIDGPE VPVLDGSSEI FIDAIEGVGI EKLDAPRKAI RILKPVIVED GAKRAALLPG DGFRVSFEID FDNPLIGRQA LEVDLHDDFF VEDIMRARTF CLRRDIEAMW AAGLAKGGSL DNAVVVDQDR ILNEEGLRYE DEFVRHKVLD AVGDLALSGR PLIGRYEGSR AGHAMNNRVL RALMADRSAW EVVDFTDASS AAHSGPELVA IPAD
|
| |