| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2417 |
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| Symbol | |
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| ID | 5456848 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 2608955 |
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| End bp | 2610394 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640877993 |
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| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase |
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| Protein accession | YP_001413683 |
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| Protein GI | 154252859 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
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| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.301638 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGCGC CTCTGTGGAC GAAAGAAGAC GTGCTGGCCG CGACGGGCGG AAAGGCAGAA
GGCGCGGCGT GGAGCGCGAG CGGTGTTTCC ATCGACAGCC GGACGCTTGA AGCGGGCGAC
CTCTTCGTCG CCATCATCGG CGAGAATTCC GATGGCCATG CCTATGTGGA AGGCGCGCTG
AAGAAGGGCG CGGCAGCAGC CATTGTGAGC GCGCCGACGG AAGCGATGCG CGCGGCGGGG
CCGCTTGTCA TCGTGACCGA CACGCTGGCG GCCTTGAACG CGCTTGGCCG GGCGGCGCGG
GCCCGGACAA AGGCGAAGGT CGTTGCCGTG ACCGGCAGCG TCGGCAAGAC GGGGACGAAA
GAGGCGCTGA AGCTCATTCT TTCCGAGCAG GGGGCGACGC ATGCCTCCGC CGCTTCCTAC
AACAATCTCT GGGGTGTGCC GCTTTCCCTC GCGCGGATGC CGGCAGCAAC GCGCTTCGGC
ATATTCGAAG TGGGGATGAA CCATCCCGGC GAGATCACGC CGCTATCGAA GCTTGTCGAA
CCTTTCGTGT CGCTGATCAC GACGGTCGAA GCGGTGCATA TGGAATTTTT CGACTCTGTC
GAGCAGATCG CCGATGCGAA GGGCGAGATT TTCGACGGTT TGCAGAAGGG CGGCGTCGCT
ATTCTCAATC GCGATAATCC GCATTACGAG CGGCTGCGCG CGAAAGCGGA AAAGAGCGGG
GCCGGACGGA TCATTTCATT CGGCGAACAT GAAGAAGCGG ATGCACGGCT GGAGAAAGCG
GCGCTGAAGG AAGACTGCTC CTGCGTGTCG GCGACGATCT GCGGGCAGAA GGTGACCTAC
AAGCTGGCCG TGCCGGGCCG CCACATCGTG ATGAACAGTC TAGCGATGCT TGCCTGCGTA
CATGCGCTGG AGGCCGACCT GGCGATGGCG GCGCTGGCCA TGGCAAGCCT CAAGGCACCG
AAGGGGCGCG GCGAGCGGCA CATCGTTTCA GCGCCGCTCG GACAGTTCAC GCTGGTGGAT
GAAAGCTACA ACGCCAATCC GGTGTCGATG CGTGCGGCGC TCGACGCGCT CGGACGGGCG
AAGCCGGAGG GCAATGGCCG CCGCATCGCC GTTATGGGCG ACATGCTGGA GATCGGCGAG
ACGTCGATCG AGATGCATCG CGGGCTTGCC GATGCGGTGC GCGAGGCCGG CATCGATCTC
GTTTTCGCCT GCGGGCCGCA TATGCGCGAA CTCTACAAGG CGCTGCCGGC GGCGGCGCAA
GGCGCATACG CGGAAACATC CGCCGAGCTC GGGCCGTTGC TCCGCGACGC GGTGGAGCCG
GGCGATGTGG TGATGGTGAA GGGGTCTCTC GGTTCCCGCA TGGGGCCGCT TGTCGATCTG
CTCAGGGGGC TGGGCGATGA CGAGGGCGAG AGCATTCGGC GCAACAGGGG GACGAACTGA
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| Protein sequence | MSAPLWTKED VLAATGGKAE GAAWSASGVS IDSRTLEAGD LFVAIIGENS DGHAYVEGAL
KKGAAAAIVS APTEAMRAAG PLVIVTDTLA ALNALGRAAR ARTKAKVVAV TGSVGKTGTK
EALKLILSEQ GATHASAASY NNLWGVPLSL ARMPAATRFG IFEVGMNHPG EITPLSKLVE
PFVSLITTVE AVHMEFFDSV EQIADAKGEI FDGLQKGGVA ILNRDNPHYE RLRAKAEKSG
AGRIISFGEH EEADARLEKA ALKEDCSCVS ATICGQKVTY KLAVPGRHIV MNSLAMLACV
HALEADLAMA ALAMASLKAP KGRGERHIVS APLGQFTLVD ESYNANPVSM RAALDALGRA
KPEGNGRRIA VMGDMLEIGE TSIEMHRGLA DAVREAGIDL VFACGPHMRE LYKALPAAAQ
GAYAETSAEL GPLLRDAVEP GDVVMVKGSL GSRMGPLVDL LRGLGDDEGE SIRRNRGTN
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