Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_2355 |
Symbol | |
ID | 5455766 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 2541164 |
End bp | 2543872 |
Gene Length | 2709 bp |
Protein Length | 902 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640877933 |
Product | PAS/PAC sensor signal transduction histidine kinase |
Protein accession | YP_001413624 |
Protein GI | 154252800 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.415333 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 0.408426 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGACAG CGTCCAACTC GATTGGCGAA ACCGATCCTG AATCAATGCG TGCGCTGCAA ATCATCGAAA GCATGCCAGG CTTTGCATGG TCGGCGGACA GCGCCGGGCA GTTCACCTAT GTCAGTCCGA AAGCGTTGGT CTTTCTCGGC AATACCAGCG CCGATCTCAA TACGGCCGAT GAAGAGGACG AATTCGGATG GCGCACGGTC GTCCATCCGG ATGACTACGA TCGAGTCGCG GCACGGTGGC GCCACTGTCT TCGTACAGGC GAGCACTATG ACACCGAGCA TCGACTGCGG CGTACGGACG GAGTGTATCG CTGGTTCCGC AATTCGGGCC GCCCTTCACG CGATAGCGAG GGGCGTATCA CCCAATGGTA CGGCACGACT ATAGATATCG AGGACCAGAA GCAGGCCGAG GCCACATTAC GCGACCGAGA ACAGGAGCTG TCGCAGCTTG TGGATATGGT TCCCAGCCAT CTTTGGCGGC TCACGGCGGA TGGCGAGCCG ATCTTCTTCA ACAGGCGCAT GATCGAGTTT ATCGGCATGG ACGTGGGGGA TCTCGGCAAT TCGCGACGGA ACCGGATGGA GGATCTGATC GACTCCTTCG TCCATCCGGA TGACGCCCAT GCGATGAAGC AAGCGCTCGC CCAAAGTCTC ACCACAGGTC AGCATTTTGT CATGCGGTAT CGTCTACGCA GGACCGACGG TGTTTATCAC TGGATGTCGA GCCGCGCCGA ACCGCTACGG GATCACGTCG GCCGGATCGT TCAATGGTAC GGCCTCTGTC ACGACATAGA CGACCAGGTG AAGGCCGAGG AGGCAGTGCG GGAAAGCGAG CAGCAGCTTC AGGGGATCAT CGACGCCGTA CCGGTTCATA TCTGGAGTTG GACACCGTCA GGCGATTTGG CCTACGTCAG CAAGCGCTAT CTGGCACATC TAGGTCTCTC AGAAGCAAAC TTCGAAGACT TCACGCGAGT GGCACAGGAA TTGGTCCATC CGGACGATGC TCCCGGGGTT CAGGCCACTG CGGCGGCCTC TCTTGCGAGC GGCGACGCTT TCGCCATGAG ATACCGACGG CTCTCCAAGG ACGGTGCCTA TCGCTGGATG GAAGGCAGGT GCGAGCCTCT GCACAACCGC GATGGAACGA TCCTGCACTG GTACGGCGTC TCCATCGACA TCGACGATCA AGTAAGGGCG GAGGAAGCTC TCAGAGCCAG CAAGCGGCAG CTGGAGCAGA TGATCGATGC CCTGCCTGTC AATATTCTGA GCTTCTCCCC TTCGGGCGAG ATGACCTATG CCAGCAAGCG CTATCTGGAG AGAGTCGGCA TACCACCGCA TATCAGGAAT TTCGACACGC TGGCTCGGGA CGTAGCTCAT CCTGAAGACT TTCCTGTGAT GTTCCGCAGG GCGACGGATG GCTTCGCAGC AGGCACGCCT TTCGTTAGCC GGTTTCGACG GCGCGAAAAA GATGGCGTCT ATCGCTGGAT AGAAGCACGC GCGCACCCGT TACGCGATAC CGACGACACG ATCGTGCAAT GGTACATCGC TGCTATCGAC ATCGAAGAGG AGATGCATGC GCAACAGGCA TTGCGAGAGA GCGAGCGCAC GCTACGCCAA CTCATCGAAA CGTTGCCTGC GCTTATCTAC TGCGCCGCAC CGGACGGCAA GCCGACCTAT CGCAGTCAGC AGCTCACCGA ATTTCTGGGA TTCGGCCTCG ATGACAAGGA CGAAACGGGA GTATCGCGTC TGGTGAGCAC GCTCGACGCC ATCATCCATC CCGATGACCT TGCGCTCGTC CATGAAAAGT ATGGCCATTC GCTGGCTACC GGGAAGCCGT ATGCGCTCAG GCACCGGCTA CGGCGCTTCG ATGGCGTCTA TCGCTGGGTC GAGACACGCG CCGCACCAAT GTGCAATGAC GAAGGTGAGA TTGTGCAGTG GAACGGTGTC TGCATAGACA TCGATAGCGA GGTGAGGACG CAGGAAGAAC TTCGTTTGGC GCAGGACAGA CTTGCACGAG CCAGTCATGC GGCCGGGCTG GCCGAACTTT CGGCCTCGAT TGCGCATGAG GTGAACCAGC CTTTGGCAGC AATCGTCGCC AACTCTCATG CCTGTCACCA TTGGCTCTCG GCGGAGCCGG CGAACATGGA GCGTGCGAAG ATCACGGTAG AGCGCATTAT CCGGGACGCG AACGGTGCCG CCGACATCGT GAGCCGTATT CGCGCCTTGT TCAAACAATC AACGGAGACG AGGGTAGTCA CGCCGCTGAG TAGCGTCATC ACCGAGATAC GCGAGCTTCT GACGGATGAA GTGACCCGGA GACGCGTGCA CATGGAGGTC GACATAGCTG ATGGCCTTCC ACCGATCGCC CTCGACCGGG TCCAGATTCA ACAGGTTCTG ATAAATCTCA TCCGAAACGG GATGGAGGCT ATGGGCTCTG TACCTGGCAG GAGAGAGCTT CGTCTCCGTG TGCGCTTTAT CGAAGATGCC ATTCGGGTTG AGCTCAGTGA CAGCGGTCCA GGAATTGAAC TGTCCGAAAA GATATTCGAG CCCTTCTTCA CGACGAAGGA GCGCGGAATG GGCATGGGGC TCGCCATCTG CCGCTCGATT GTAGAGTCCC ATGGCGGCCG GCTCTGGGCA GAGAACAACA CCCCGCACGG CGCGACGTTT GTTTTTGCGC TGCCAGTTGA AGCAACGGCG GCGGCATGA
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Protein sequence | MTTASNSIGE TDPESMRALQ IIESMPGFAW SADSAGQFTY VSPKALVFLG NTSADLNTAD EEDEFGWRTV VHPDDYDRVA ARWRHCLRTG EHYDTEHRLR RTDGVYRWFR NSGRPSRDSE GRITQWYGTT IDIEDQKQAE ATLRDREQEL SQLVDMVPSH LWRLTADGEP IFFNRRMIEF IGMDVGDLGN SRRNRMEDLI DSFVHPDDAH AMKQALAQSL TTGQHFVMRY RLRRTDGVYH WMSSRAEPLR DHVGRIVQWY GLCHDIDDQV KAEEAVRESE QQLQGIIDAV PVHIWSWTPS GDLAYVSKRY LAHLGLSEAN FEDFTRVAQE LVHPDDAPGV QATAAASLAS GDAFAMRYRR LSKDGAYRWM EGRCEPLHNR DGTILHWYGV SIDIDDQVRA EEALRASKRQ LEQMIDALPV NILSFSPSGE MTYASKRYLE RVGIPPHIRN FDTLARDVAH PEDFPVMFRR ATDGFAAGTP FVSRFRRREK DGVYRWIEAR AHPLRDTDDT IVQWYIAAID IEEEMHAQQA LRESERTLRQ LIETLPALIY CAAPDGKPTY RSQQLTEFLG FGLDDKDETG VSRLVSTLDA IIHPDDLALV HEKYGHSLAT GKPYALRHRL RRFDGVYRWV ETRAAPMCND EGEIVQWNGV CIDIDSEVRT QEELRLAQDR LARASHAAGL AELSASIAHE VNQPLAAIVA NSHACHHWLS AEPANMERAK ITVERIIRDA NGAADIVSRI RALFKQSTET RVVTPLSSVI TEIRELLTDE VTRRRVHMEV DIADGLPPIA LDRVQIQQVL INLIRNGMEA MGSVPGRREL RLRVRFIEDA IRVELSDSGP GIELSEKIFE PFFTTKERGM GMGLAICRSI VESHGGRLWA ENNTPHGATF VFALPVEATA AA
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