| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2317 |
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| Symbol | |
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| ID | 5456851 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 2488356 |
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| End bp | 2490326 |
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| Gene Length | 1971 bp |
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| Protein Length | 656 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640877896 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_001413588 |
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| Protein GI | 154252764 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.1091 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 0.0115511 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGAAGA CAGCGGAACA GACGGAAGCA CCCGAAGCGG CACCCGAGGC GCCGCAGGAT
GGGCCGCTTC TCGACATGTC CGATGCGGCA GTCAAGAAGA TGATAAAGGC CGCCAAGGCG
CGCGGCTTCG TCACCTATGA CGAGTTGAAC AAGGTTCTGC CGTCCGAGGA GTTCTCCTCC
GAGCAGATCG AGGACACGCT GTCGATGCTC TCGGAAATGG GCATCAATGT CGTCGAGAAC
GACGAGGCCG AGGACAACGC CGAAGGCGCC GACGGCGAAG CGGATGAAGA CCGCGACGAC
GAAGAGGCGC CCACTGGCAA GGCCGTCGCC ACCACGACCA CCACCTCGTC CTCGCTCGAC
CGGACGGACG ATCCGGTCCG CATGTATCTG CGCGAAATGG GTTCCGTCGA GCTTCTGTCG
CGTGAAGGCG AAATCGCTAT CGCCAAGCGC ATCGAGGCCG GCCGCGAAAC CATGATCGCC
GGGCTCTGCG AAAGCCCGCT CACCTTCCAG GCCATCATCA TCTGGCGCGA CGAATTGAAC
GAGGGAAAGA TTCTCCTTCG CGACATCATC GATCTCGACG CCACTTTCGC CGGTCCCGAT
GCGAAGAAGG TCGACCACAG CCAGGCCGCA CTCGCCGGCG AGGCGCCGCC GCGCATCGAA
CCGGAAGAGG AAGAAGTCGA CGAGGATGGC GAGGACGACA ACTCCATGTC GCTCGCCGCG
ATGGAAGCCG AGCTGAAGCC GAAGGTTCTC GAAACCTTCG ACACCATCGC CGCCGACTAC
AAGAAGCTCC GCAAGCTGCA GGACCAGAAG GTCGAACTGG CGCTGCAGGG CGAGGCGCTT
TCCTCCGCGC AGGAAAAGAA ATACCAGAAG CTCACATCGG ACCTCATCGA GGAAGTGAAG
AGCCTTTCGC TCAACAACAA CCGCATCGAA AGCCTTGTCG AGCAGCTCTA CGCGATCAAC
AAGCGCCTGA TGGGTCTCGA AGGACGCCTG CTGCGTCTCG CCGAAAGCCA CGGCATCCCG
CGCGACGAAT TCCTGAAGCA GTATTTCGGC AATGAGCTCG ACCCGAACTG GATTCGCCGC
GTCAGCCGCC TGAAGGGCAA GGGCTGGGTC AACTTCACGA AGGATGAGCG CGACCAGGTG
AAGGATCTCC GTCAGGAAAT CCAGACGCTC GCCTCCGAAA CCGGCCTCGA CATCCAGGAA
TACCGCCGCA TCGTTTCGGG CGTGCAGAAG GGCGAGCGCG AGGCGCGCAT CGCCAAGAAG
GAAATGGTGG AAGCAAACCT CCGCCTCGTC ATTTCCATCG CCAAGAAATA CACGAACCGC
GGGCTGCAAT TCCTCGATCT CATCCAGGAA GGCAATATCG GCCTCATGAA GGCGGTCGAT
AAGTTCGAAT ACCGCCGCGG CTACAAGTTC TCGACCTATG CGACGTGGTG GATCCGTCAG
GCGATCACGC GCTCGATTGC GGACCAGGCG CGCACCATCC GCATCCCGGT CCACATGATC
GAGACGATCA ACAAGCTGGT GCGCACCTCG CGCCAGATGC TCCACGAAAT CGGTCGCGAG
CCGACGCCGG AAGAGCTCGC CGAAAAGCTC GGCATGCCGC TCGAAAAGGT CCGCAAGGTG
CTGAAGATCG CGAAGGAGCC GATCTCGCTC GAAACGCCCA TCGGCGACGA GGAAGACAGC
CACCTCGGCG ACTTCATCGA GGACAAGAAC GCGATCCTAC CGATCGACGC CGCGATCCAG
TCGAACCTGC GCGAGACGAC GACCCGCGTG CTGGCCTCGC TCACGCCGCG CGAGGAGCGC
GTGCTCCGCA TGCGCTTCGG CATCGGCATG AACACCGACC ACACGCTGGA AGAAGTCGGC
CAGCAATTCT CGGTAACGCG CGAACGCATC CGCCAGATCG AAGCCAAGGC GCTCCGCAAG
CTGAAGCACC CGAGCCGCAG CCGGAAGTTG CGCTCGTTCC TCGACAACTA A
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| Protein sequence | MAKTAEQTEA PEAAPEAPQD GPLLDMSDAA VKKMIKAAKA RGFVTYDELN KVLPSEEFSS
EQIEDTLSML SEMGINVVEN DEAEDNAEGA DGEADEDRDD EEAPTGKAVA TTTTTSSSLD
RTDDPVRMYL REMGSVELLS REGEIAIAKR IEAGRETMIA GLCESPLTFQ AIIIWRDELN
EGKILLRDII DLDATFAGPD AKKVDHSQAA LAGEAPPRIE PEEEEVDEDG EDDNSMSLAA
MEAELKPKVL ETFDTIAADY KKLRKLQDQK VELALQGEAL SSAQEKKYQK LTSDLIEEVK
SLSLNNNRIE SLVEQLYAIN KRLMGLEGRL LRLAESHGIP RDEFLKQYFG NELDPNWIRR
VSRLKGKGWV NFTKDERDQV KDLRQEIQTL ASETGLDIQE YRRIVSGVQK GEREARIAKK
EMVEANLRLV ISIAKKYTNR GLQFLDLIQE GNIGLMKAVD KFEYRRGYKF STYATWWIRQ
AITRSIADQA RTIRIPVHMI ETINKLVRTS RQMLHEIGRE PTPEELAEKL GMPLEKVRKV
LKIAKEPISL ETPIGDEEDS HLGDFIEDKN AILPIDAAIQ SNLRETTTRV LASLTPREER
VLRMRFGIGM NTDHTLEEVG QQFSVTRERI RQIEAKALRK LKHPSRSRKL RSFLDN
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