Gene Plav_2301 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_2301 
Symbol 
ID5456917 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp2468506 
End bp2469318 
Gene Length813 bp 
Protein Length270 aa 
Translation table11 
GC content63% 
IMG OID640877880 
Productpeptidase M48 Ste24p 
Protein accessionYP_001413572 
Protein GI154252748 
COG category[R] General function prediction only 
COG ID[COG4783] Putative Zn-dependent protease, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.114592 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones49 
Fosmid unclonability p-value0.277953 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACGTCA ATCTTACATT TCTCGACCAG AAGCCGATTG AACTGAACCG CCGCCAGCTC 
GTGAAGGGTT TGGCTGCCGG CTATATCGTC GCGCTTTCGG GATGCGTAGA CAATCCGGCA
TTGGGCAGGC AGCAACTGCT GCTCGTCTCC GAAGCGCAGA TGACCCAGCT CTCCGCCTCC
GCGTGGTCCC AAATCCGCGA GCAGCAAAAA GTTTCCACGA ACCGGACCTT GAACAACCGC
CTGAAGACGG CCGGTCCGCG TCTTGTGCAG GCGGCGGGCC TTCAAAACCA GGCCTGGGAA
TACACCGTCT TTCAGGGCGA TGAGGCCAAT GCCTTCGTAC TGCCCGGCGG CAAAGTCGGC
TTCTATGAAG GCATCTTCAA GCGGATGGAA AACGACGACC AGCTCGCCAC CGTTCTCGGC
CACGAAATCG CGCATGTCGC CGCCCGCCAT TCGGCGGAGC GATACAGCCA GCAGGTGGCG
TCGGGCATCG GCATGCAGGC GGCGCAGGTG GCGCTACAGG CAGGCGATGT CGGCGGCGCG
GGCACCATCG CGGCCGTGCT CGGCGCGGGC CTGCAATTCG GCGTACTGCT CCCTTATTCC
CGCACGCATG AACTGGAGGC CGACAGGCTT GGCCTCACCT ATATGGCGAA GGCCGGCTAC
GACCCGCGCC AGTCGCTCCG CTTCTGGCAG AACATGACGG CTCAGCGCGG CAACGCCGCC
CCGCCGCCGG AACTCATGTC GACACACCCC TCGGACACAA CGCGCATAGC CGCGCTGCAA
CAGCAGCTCC GCAGCATGGG TTATCAGGTA TGA
 
Protein sequence
MDVNLTFLDQ KPIELNRRQL VKGLAAGYIV ALSGCVDNPA LGRQQLLLVS EAQMTQLSAS 
AWSQIREQQK VSTNRTLNNR LKTAGPRLVQ AAGLQNQAWE YTVFQGDEAN AFVLPGGKVG
FYEGIFKRME NDDQLATVLG HEIAHVAARH SAERYSQQVA SGIGMQAAQV ALQAGDVGGA
GTIAAVLGAG LQFGVLLPYS RTHELEADRL GLTYMAKAGY DPRQSLRFWQ NMTAQRGNAA
PPPELMSTHP SDTTRIAALQ QQLRSMGYQV