| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2164 |
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| Symbol | |
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| ID | 5454579 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 2343868 |
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| End bp | 2345316 |
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| Gene Length | 1449 bp |
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| Protein Length | 482 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640877741 |
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| Product | RluA family pseudouridine synthase |
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| Protein accession | YP_001413435 |
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| Protein GI | 154252611 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.317837 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 69 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGCCGA GCTCTTCGCC GGTCTTCACA TTGATGATGA TGATGGCCTC GGCGCCGTCG
CTGCCGACAT GGACGGCGAT GCGCTCTTCA TCGAGCGTGA CGGAGCGGAC GGTCTCGCCC
GGCGCGACGG CGATGCGCGA GACGCCGAAT TGGTCGCCCG AGGGCAGCGC CGCCTCGCGG
CTGCCCGAAC CGCTGAGCCG CCAGACAAAG GCGGCGATGA CGACCATGAA GCTCAGCACC
AGCACAGCCG ACATGATGGC CATGGCGCGC TTCAGCTTGC GAAGGTCCGG CCCGCCGGCT
GCGACGGATT GCGGCGCTTC GCGCTGCGAT GTTGTATCCT CGGCCATGAT GTCGATCGCT
CCTGAAACGC TGAATGAAAG CCCCCGCGCC GAAGCGGAGA CGCGCGCCGT GACTGTAACG
GCGGAGGATG CGGGCGCGCG GCTCGACAAG TATCTCACGG AGGCGCTGGG GGACAAGGGC
GAAGGCGACG CGCCCGCAAC GCTCTCTCGC GCGCGGATGC GCCAGCTGAT CGAACAGGGG
CAGGTCTCGC GCGAGGAGAA GGCGGGCGCG CCGAAGCTCC TCACCGATCC CTCCTACCGC
GTGAAGGCGG GCGAGCGCCT CTCCGTCTCG GTGCCGCCGC CGACGCCCGC AAAGCCCGCG
GGACAGGCGA TCCCGCTCGA AATCGTTTAC GAGGATGCCG ACCTCATCGT GGTGATGAAG
CCGGCGGGGC TCGTCGTCCA TCCCGCGCCC GGCAACCCGG ACATGACGCT GGTGAACGCG
CTGGTCGCGC ATTGCGGCGA GACGCTTTCG GGCATCGGCG GCGAGAAGCG GCCGGGCATC
GTCCACCGGC TCGACAAGGA GACGAGCGGG CTGATGGTCG TCGCGAAGAC GGACCGCGCG
CATCAGGGCC TCTCCGCGCA ATTCGCCGCG CATGGCCGCG ACGGCAAACT GACGCGCGCC
TATACGGCGC TCACATGGGG CGTGCCGCAG ACGCGCAAGG GAACAGTCGA CGCGAACATC
GCGCGCTCAA GCCATAACCG CTCGAAGATG GCGACGGTGC GCGACCGGGG CGAGGAAACC
GGCGGCCGCA TCGCCATCAC GCATTATACG GTGAAGACGG ATTATGCCGA CGGGCTGGTG
GCCGAAGTCG AATGCCGCCT CGAAACCGGC CGCACCCACC AGATCCGCGT TCACATGACG
GCACTCGGCC ACCCGCTGCT CGGCGACGCG ACCTATGGCA CGGGGATGAA AAGCCGCAAA
TCGAAACTCT CGCCGGAAGC GCAAGCCGCG CTGGAACGGC TGAACCGCCA GGCGCTGCAC
GCGCATCATC TGGGCTTTGA GCATCCGGTG GCAGGAGAGA AGATGAGCTT TGATGCTCCG
TTGCCGGAGG ATATGCAGGA GCTGGTGAGG GCGTTGGAGG GGGTGAGGGA CGGTTTGCGC
AGCAAATGA
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| Protein sequence | MRPSSSPVFT LMMMMASAPS LPTWTAMRSS SSVTERTVSP GATAMRETPN WSPEGSAASR
LPEPLSRQTK AAMTTMKLST STADMMAMAR FSLRRSGPPA ATDCGASRCD VVSSAMMSIA
PETLNESPRA EAETRAVTVT AEDAGARLDK YLTEALGDKG EGDAPATLSR ARMRQLIEQG
QVSREEKAGA PKLLTDPSYR VKAGERLSVS VPPPTPAKPA GQAIPLEIVY EDADLIVVMK
PAGLVVHPAP GNPDMTLVNA LVAHCGETLS GIGGEKRPGI VHRLDKETSG LMVVAKTDRA
HQGLSAQFAA HGRDGKLTRA YTALTWGVPQ TRKGTVDANI ARSSHNRSKM ATVRDRGEET
GGRIAITHYT VKTDYADGLV AEVECRLETG RTHQIRVHMT ALGHPLLGDA TYGTGMKSRK
SKLSPEAQAA LERLNRQALH AHHLGFEHPV AGEKMSFDAP LPEDMQELVR ALEGVRDGLR
SK
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