| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2159 |
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| Symbol | |
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| ID | 5456223 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 2340055 |
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| End bp | 2341077 |
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| Gene Length | 1023 bp |
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| Protein Length | 340 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640877736 |
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| Product | RNA polymerase, sigma 32 subunit, RpoH |
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| Protein accession | YP_001413430 |
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| Protein GI | 154252606 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 71 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGCCCGG GGACCGGGCC GGATCAGGGG TTTGCCATGG CCGAGGCCAA GACAGAGAAA
ACAGCAGGCA AGGCCGCCGA AAAGGCGCCC AAGGCGCCGA GGGCGCTGGT GAAGGCGCCG
GGGACGCGGC TCGCGCCCGC GCCTAACCCG GAGGGCTCGC TGTCGCGCTA CCTGCAGGAA
ATCCGCAAGT TTCCGATGCT GGAGCCGCAG GAGGAATACA TGCTCGCCAA ACGCTGGCGG
GAGCATGAGG ACACCGAGGC GGCGCACCAG CTTGTGACGT CGCATCTCCG CCTCGTGGCG
AAGATCGCCA TGGGCTATCG CGGCTATGGG CTGCCGATCG GCGAGGTGAT CTCGGAAGGC
AATGTGGGCC TGATGCAGGC GGTGAAGCGC TTCGAGCCGG AGCGCGGCTT CCGGCTTGCG
ACCTATGCCA TGTGGTGGAT CCGCGCCTCG ATCCAGGAAT ATATCCTGCG GTCATGGTCG
CTCGTGAAAA TGGGCACGAC CGCGGCGCAG AAGAAGCTCT TCTTCAATCT CCGCAAGGTG
AAGGGCCAGA TCCAGGCGAT CGAGGAAGGC GACCTCCACC CCGAACAGGT GAAGGTGATT
TCCGACCGGC TCGGCGTGAC CGAGGACGAG GTGATCTCGA TGAACCGGCG GCTTTCCGGC
CCCGACAATT CGCTGAACGC ACCCTTGCGG CAGGACTCGG AAGGCGGCGA GTGGCAGGAC
TGGCTGGTGG ACGACACCGC CGATCAGGAA GCGACGCTGG GCGAGGCCGA GGAGCTGGAC
CAGCGCCGCG AAATGCTGGC CGCCGCCATG GCGACGCTGA ACGAGCGCGA GATGCACATT
CTGACGGAGC GCAGGCTGAA GGACGAGCCG GCGACGCTGG AAGACCTCAG CCAGGAATAT
GGCATCAGCC GAGAGCGCGT GCGCCAGATC GAGGTGCGCG CCTTCGAGAA GCTGCAGAAA
GCCATGAAAA ACGCCATGCG CGCCGATGCG GACGCAAGGC GGGACGCGCT GGCCGGCGTG
TGA
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| Protein sequence | MGPGTGPDQG FAMAEAKTEK TAGKAAEKAP KAPRALVKAP GTRLAPAPNP EGSLSRYLQE
IRKFPMLEPQ EEYMLAKRWR EHEDTEAAHQ LVTSHLRLVA KIAMGYRGYG LPIGEVISEG
NVGLMQAVKR FEPERGFRLA TYAMWWIRAS IQEYILRSWS LVKMGTTAAQ KKLFFNLRKV
KGQIQAIEEG DLHPEQVKVI SDRLGVTEDE VISMNRRLSG PDNSLNAPLR QDSEGGEWQD
WLVDDTADQE ATLGEAEELD QRREMLAAAM ATLNEREMHI LTERRLKDEP ATLEDLSQEY
GISRERVRQI EVRAFEKLQK AMKNAMRADA DARRDALAGV
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