| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2138 |
|---|
| Symbol | |
|---|
| ID | 5456827 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 2320176 |
|---|
| End bp | 2321753 |
|---|
| Gene Length | 1578 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640877715 |
|---|
| Product | D-3-phosphoglycerate dehydrogenase |
|---|
| Protein accession | YP_001413409 |
|---|
| Protein GI | 154252585 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01327] D-3-phosphoglycerate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 62 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAAGG TTCTGATTTC CGATCAGCTT TCCCCCGCCG CCGTGCAGAT CTTCAAGGAT
CGCGGTCTTG AAGTAGATGT GAAGACCGGT CTCGACCGCG ACGAACTCAT CAAGATCATC
GGCGATTATG ATGGCCTCGC CATCCGCTCG GCCACCAAGG TCACGCCGCC GGTTCTCGCC
GCCGCGAAGA AGCTGAAGGT CGTTGGCCGC GCCGGCATCG GCGTGGACAA TGTCGATCTT
CCGGCCGCCA CCGCCGCCGG CGTTATCGTC ATGAACACAC CTTTCGGCAA TTCGATCACG
ACCGCCGAAC ATGCGATCGC CATGATGTTC GCGCTCGCCC GCGACATTCC GCAGGCGAAT
GCCTCGACCC ATGCAGGCAA GTGGGAAAAG TCGAAATTCA TGGGCGTCGA AGTCACCGGC
AAGGTGCTCG GCATCATCGG CTGCGGCAAT ATCGGCTCCA TCGTGGCCGA TCGCGGCATT
GGCCTGCGCA TGAAAGTCAT CGCCTTCGAC CCCTTCCTCA CGCCGGAGCG CGCGCAGGAT
ATGGGTGTGG AGAAGGTCGA GCTTGAAGAC CTCCTCAAGC GTGCCGACTT CATTACCCTC
CACACGCCGC TCACCGACAA GACGCGCAAT ATTCTCAACG CGGAAAACCT CGCCAAGTGC
AAGAAGGGCG TCCGCATCGT CAATTGCGCG CGCGGCGGTC TCATCGTCGA ATCCGATCTC
AAGGCGGCCA TTGAAAGCGG CCATGTCGCG GGCGCGGCGC TCGACGTGTT CGAGGAAGAG
CCCGCGAAGT CGAACCCGCT CTTCGGCATG GACCAGGTCA TCTGCACGCC GCATCTCGGC
GCCTCCACCA ATGAAGCGCA GGAAAATGTC GCGTTGCAGG TCGCCGAGCA GATGGCGGAT
TACCTCCTCA CCGGCGCCGT CACCAATTCG ATCAACGTGC CCGCCGTCTC GGCGGAAGAA
GCGCCGAAGC TCACACCCTT CCTCACGCTT GCGCAGCAGC TCGGCTCCTT CGCCGGCCAG
CTCACGGAAA GCGGCATTTC CGAAGTCACC ATCGAATATG CAGGCGACGT CGCGGAAATG
AATACCCGCG TGCTCACCAA TGCCGCTCTT ACCGGGCTCC TCAAGCCGCA GCTCGAGGAC
GTCAACATGG TGTCCGCTCC CGTCATCGCC AAGGACCGCA ATATCAAGGT CTCGGAAGTG
AAGCGCGAGC AGCAGGGCGC CTACGAAACC TATATCCGTC TCATCGTGAA GACGGAGCGT
CAGGAACGTT CGGTTGCCGG CACGGTGTTC TCGGGTGGCC TCCCGCGCCT CATCCAGATC
AAGAGCGTGA ACATGGAAGC AGCTCTCGGG CGGCACATGC TCTATGTGAC GAACCTCGAC
AAGCCGGGCT TCATCGGTGC GCTCGGTTCG ACGCTCGGCA AGGCGGGTAT CAACATCGCC
AACTTCAATC TCGGCCGCGA GAAGGCCGGT GGCGATGCCA TCTGCCTCAT CGAGGTCGAT
GCCGATGTGC CTGCCGCGAC GCTCGCCGAA ATCCAGGCCC TGCCGCATGT CGTGCAGGTG
AAGGCGCTGA GCTTCTGA
|
|---|
| Protein sequence | MPKVLISDQL SPAAVQIFKD RGLEVDVKTG LDRDELIKII GDYDGLAIRS ATKVTPPVLA
AAKKLKVVGR AGIGVDNVDL PAATAAGVIV MNTPFGNSIT TAEHAIAMMF ALARDIPQAN
ASTHAGKWEK SKFMGVEVTG KVLGIIGCGN IGSIVADRGI GLRMKVIAFD PFLTPERAQD
MGVEKVELED LLKRADFITL HTPLTDKTRN ILNAENLAKC KKGVRIVNCA RGGLIVESDL
KAAIESGHVA GAALDVFEEE PAKSNPLFGM DQVICTPHLG ASTNEAQENV ALQVAEQMAD
YLLTGAVTNS INVPAVSAEE APKLTPFLTL AQQLGSFAGQ LTESGISEVT IEYAGDVAEM
NTRVLTNAAL TGLLKPQLED VNMVSAPVIA KDRNIKVSEV KREQQGAYET YIRLIVKTER
QERSVAGTVF SGGLPRLIQI KSVNMEAALG RHMLYVTNLD KPGFIGALGS TLGKAGINIA
NFNLGREKAG GDAICLIEVD ADVPAATLAE IQALPHVVQV KALSF
|
|---|
| |