| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2133 |
|---|
| Symbol | |
|---|
| ID | 5455349 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 2314864 |
|---|
| End bp | 2316294 |
|---|
| Gene Length | 1431 bp |
|---|
| Protein Length | 476 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640877710 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_001413404 |
|---|
| Protein GI | 154252580 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 63 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAATTT CCCCATTTCA TGCCGCCGGC ATAGAAGCCC GCCCCGGTCC CCGCTACCGC
GCCATCGCGG ATGCGCTTCG CGATGCGATC AAGATGGGGA CGCTGCTTCC CGGCACCAAG
CTGCCGCCGC TACGCGACCT CGCCTATGAA CTCGGCGTGA CGGTCGGCAC GGTCTCGCGC
GCCTATGCAC TGGCGGCAAG CCGAGGCGAA GTATCCGGCG AGGTCGGACG CGGCACCTTT
GTGCTGGGAG CACCGACCGG GAAGGCCGCG TCATCAGGCG TCGGCTCGGC GGCGTTTCTG
ACGATCCCGG ATACGACCCA GGCCGCGATG AAAGCAGCCT ACGCCCCGCC CGCCGGCCAG
ACGGAAGTCA TCCGCGCGGT CATGACAGAG CTGTTGGCCG AACCGCAGCC TCAGGATGCG
CCCTCCCTTT TCAACAGCTA CCTGACACCC GGCGGCGATG CACGGCAGAG AGAGGCAGCG
GCGGCATGGC TTGCGCATGG AGATTACAAA CCGCAGGCGG ACGAACTGAT TATCTGCTCG
GGTGCGCAAC AGGGCATTCT CGCCGCGATA CTTTCGGCAA CCGAACCCGG CGACACCATT
CTGACGGAAG CACTCACCTA TCAAGCCATG GTGGTCCAGG CGACGCTGCT GGGGCGGCGC
GTATCGCCCG TGGATATTGA CGGCGAAGGA ATTGAACCCG GCGCGCTCTC CCGCGCGGCA
AGCGAAACGA GACCGGCGGC GCTCTTCATC GTTCCTACGT TGCAGAACCC TACCAGCGCG
ATCATGAGCG AAGAAAGACG GCGCGAGATC GCGGAAATCG CACGGCGCCA TGAATTCGCG
ATTATCGAGG ACGATGTTTA CGGCGCCCTG GCGCCGGAAC GTCCCGTTCC CATCGCGCAT
ATCCTGCCGG AGCAGACCTA TTACGTGACG AGCCTCGCGA AGTCGGTCGG CTGCGGGCTG
CGTGTCGGTT TTCTGAAGCC GCCCGCCGCC ATGCTCGAGC GCACGCGAGC GATCAACCAT
GCATTCGGCC AGACAGTGCC GCCGCTGATG GCGCGGCTTG CCACACGCCT GATGGAAAAT
GGCGACGGGA CAATGCTGAC CGGAAAACTG CGGGAGGAAA TGTGCGCGCG GCACGAAATC
GCCGCCGCTG CACTGAAGGG ACGGAAACTC GCCGCGCATC CAGCTTCACT TTACGTTTGG
ATGGCCCTGC CGGATACATG GCACGCACAT GTCTTCGTGG AAGCGGCGCG GGCGCGCGGC
GTCGCCATCG CCGCCGGAGA GGATTTCATG GTGGGCCGCA CCGACCGCGC CTCGCGTCAT
GTACGGCTCG CCATTGGCCA GCCGCAATCG AGAGAGGAAC TGGCGGCCGG GCTTGGCATC
GTGAGTGAAC TGCTTGACGC GGGGCCGATT TCTTCGTCGC TAGTGGCGTG A
|
|---|
| Protein sequence | MTISPFHAAG IEARPGPRYR AIADALRDAI KMGTLLPGTK LPPLRDLAYE LGVTVGTVSR
AYALAASRGE VSGEVGRGTF VLGAPTGKAA SSGVGSAAFL TIPDTTQAAM KAAYAPPAGQ
TEVIRAVMTE LLAEPQPQDA PSLFNSYLTP GGDARQREAA AAWLAHGDYK PQADELIICS
GAQQGILAAI LSATEPGDTI LTEALTYQAM VVQATLLGRR VSPVDIDGEG IEPGALSRAA
SETRPAALFI VPTLQNPTSA IMSEERRREI AEIARRHEFA IIEDDVYGAL APERPVPIAH
ILPEQTYYVT SLAKSVGCGL RVGFLKPPAA MLERTRAINH AFGQTVPPLM ARLATRLMEN
GDGTMLTGKL REEMCARHEI AAAALKGRKL AAHPASLYVW MALPDTWHAH VFVEAARARG
VAIAAGEDFM VGRTDRASRH VRLAIGQPQS REELAAGLGI VSELLDAGPI SSSLVA
|
|---|
| |