| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2122 |
|---|
| Symbol | |
|---|
| ID | 5455208 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 2302396 |
|---|
| End bp | 2303736 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640877699 |
|---|
| Product | beta-propeller repeat-containing to-pal system protein TolB |
|---|
| Protein accession | YP_001413393 |
|---|
| Protein GI | 154252569 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
|---|
| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.256883 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 0.227077 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGATG TTCAGACGGT CCGGCGCGGA AACGCGGTTC AGAGTCTCAT GTCGAAGCTC
ATCCTGCCAT TGGTCATGGC GGTGGCTTTC GCTTTGCCGG CGCGGGCGGC ACTGCAGATC
GACATTACCC AGGGCAACGT CGATCCGTTG CCGATTGCCA TCACCGATTT TGTCGGTGAA
GGGTCTGTCG GCGCCGACAT GTCGGCTGTC ATAAGCAACA ATCTGGAGCG CTCGGGACTC
TTCCGGCCCT TGCCGAAAGC GTCTTTCATC GAAAAAGTTT CCGACATCAA TGTCCAGCCG
CGCTTCGGCG ACTGGCGCGT CATCAATTCC CAGGCGCTGG TGACGGGGCA GACGCGAATG
GAAGCCGATG GCCGTCTCCG CGTGGAGTTC AGGCTTTGGG ATGTGCTCGG CGAGCAGCAG
CTTACCGGTC TACAGTTTTT CACCACGCCC GATAACTGGC GCCGCGTCGC ACATCTTATT
TCCGATGCGA TCTACAAGCG GCTCACGGGC GAGGATGGAT ATTTTGACAC GCGTATTGTC
TATGTATCCG AAACGGGACC TAAAAACGCG CGTGTGAAGC GCCTCACGAT CATGGATCAG
GATGGGCACA ACCCGCGCAT GCTGACGCGC GGCAACGAGC TTGTGCTGAC CCCCCGCTTC
AGCCCCAACT CCCAGGAAAT CACCTATCTC GCCTACCGGA ACAACCAGCC GCGAGTTTAC
GTCCTCGACA TCGAGACGGG GCAGCAGGAA GTGGTAGGCG AATTTCCCGG CATGACCTTC
GCGCCGCGTT TTTCGCCGGA CGGACAGCGC ATCATCATGA GCCTTCAACG CGGCGGGAAT
TCCGACATCT ACACCATGGA TCTCCGGAGC CGCCAGGTTG TGCGTCTCAC CAATACGGCG
GCCATCGACA CGGCGCCGAG TTATTCGCCG GATGGCCGGC AGATTACCTT TGAATCGGAC
CGAGGCGGTT CGCAGCAGAT TTACGTCATG GATGCGAGTG GCTCGAATCA GCGCCGTATC
AGCTTCGGGC AGGGCAGCTA TGCCACGCCC GTCTGGTCGC CGCGCGGCGA TCTCATCGCC
TTCACCAAGA TAACAGGCGG CCGGTTCGTG ATTGGCGTCA TGCGGCCCGA CGGTACCGGC
GAACGCGTGC TGACGGATGG CTTCCACAAT GAGGGGCCGA CATGGGCTCC CAATGGCCGT
GTTCTGATGT TTTTCCGTGA AACGCGGGGC GCACAGGGCG GGCCAAGCCT CTGGTCGGTC
GATGTTACCG GATATAACGA GCGCCCGTCG CCAACGCCGA CGTTTGCCTC GGACCCGGCC
TGGTCGCCGC GGATACAGTA G
|
|---|
| Protein sequence | MMDVQTVRRG NAVQSLMSKL ILPLVMAVAF ALPARAALQI DITQGNVDPL PIAITDFVGE
GSVGADMSAV ISNNLERSGL FRPLPKASFI EKVSDINVQP RFGDWRVINS QALVTGQTRM
EADGRLRVEF RLWDVLGEQQ LTGLQFFTTP DNWRRVAHLI SDAIYKRLTG EDGYFDTRIV
YVSETGPKNA RVKRLTIMDQ DGHNPRMLTR GNELVLTPRF SPNSQEITYL AYRNNQPRVY
VLDIETGQQE VVGEFPGMTF APRFSPDGQR IIMSLQRGGN SDIYTMDLRS RQVVRLTNTA
AIDTAPSYSP DGRQITFESD RGGSQQIYVM DASGSNQRRI SFGQGSYATP VWSPRGDLIA
FTKITGGRFV IGVMRPDGTG ERVLTDGFHN EGPTWAPNGR VLMFFRETRG AQGGPSLWSV
DVTGYNERPS PTPTFASDPA WSPRIQ
|
|---|
| |