Gene Plav_2120 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_2120 
Symbol 
ID5455846 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp2301070 
End bp2301528 
Gene Length459 bp 
Protein Length152 aa 
Translation table11 
GC content60% 
IMG OID640877697 
Productbiopolymer transport TolR 
Protein accessionYP_001413391 
Protein GI154252567 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0848] Biopolymer transport protein 
TIGRFAM ID[TIGR02801] TolR protein 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.0523748 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones51 
Fosmid unclonability p-value0.245656 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGATGT CCGTCGGAGG CAAGAAGTCT GGGCGTGGAC GGTTTGCACG CCAGCCTATG 
TCAGAGATCA ACGTGACGCC GGTCGTCGAC GTCATGCTCG TGCTCCTTAT CGTCTTCATG
GTGGCGGCGC CGTTGCTCAC TGTGGGTGTG CCCGTCGATC TGCCGAAGAC ACAGGCAGCG
CCCATTTCCG GCGACAACGA ACCGCTCACG ATCACGATCA ACGGTGAGGG AACGATCTTC
GTGCAGGAAA CGCAGGTCGA AGCGGATGCG CTGGTGGAGC AACTTCTGGC GATCGCGGAG
AATGGCTACG AGCAGCGCAT CTTCGTGCGC GCGGATAGCG GGATCAGTTA CGGGAAGGTC
ATGGACGTGA TGGGCCGTAT AAGCTCATCG GGTTTTTCAA AGGTCGGTCT CGTAACGGAG
ACGGACACCG CGCCGGCGAA GAAGCCGGGC GCCAATTAA
 
Protein sequence
MAMSVGGKKS GRGRFARQPM SEINVTPVVD VMLVLLIVFM VAAPLLTVGV PVDLPKTQAA 
PISGDNEPLT ITINGEGTIF VQETQVEADA LVEQLLAIAE NGYEQRIFVR ADSGISYGKV
MDVMGRISSS GFSKVGLVTE TDTAPAKKPG AN