| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2116 |
|---|
| Symbol | |
|---|
| ID | 5453578 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 2297955 |
|---|
| End bp | 2298572 |
|---|
| Gene Length | 618 bp |
|---|
| Protein Length | 205 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640877693 |
|---|
| Product | Holliday junction DNA helicase RuvA |
|---|
| Protein accession | YP_001413387 |
|---|
| Protein GI | 154252563 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0632] Holliday junction resolvasome, DNA-binding subunit |
|---|
| TIGRFAM ID | [TIGR00084] Holliday junction DNA helicase, RuvA subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.060055 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 0.258281 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGGCA AGCTCAGAGG TATCGTCGAC TCGACAGGGG AGGACTGGGC GGTCATCGAC
GTGGGGGGCG TTGGCTATCA CGTTACGTGC TCCAGCCGGA CATTGCGCAA TCTTCCACCG
GCCGGAGGCG CCGTCACGCT CTCGATCGAA ACCAAAGTCA GCGATGAAGC TATAAGACTG
ATCGGCTTCA CGACCGACAG TGAGCGCGAA TGGTTTCGAC TGCTTCTCGC GGTACAAGGT
GTCGGCACCC GCGTTGCGCT CGGCGTGCTT GGCACGCTGG CACCTGCAGA CCTCGCCCGT
GCTATTGCAC TCGATGACAA GAAAGCCGTA TCGGCGGCGC CAGGTGTAGG GCCTAAGGTC
GCTGCGCGGA TTGTGACAGA ACTGAAAGAC AAGGTGCCTG ACAGCATGGG CCTTTCAGCC
GCACTTGAAG TTGGCGTCAA TGGCGAGGCC GTTTCGTCTG TCTCCGCGCC GGCACGGGAC
GCTGTCTCTG CACTCGTCAA TCTCGGATAT CCGCAGGCGC AGGCAATGGG CGCGGTCGCA
GCCGCAGCGA AGCGACTGGA TGATGCGGCC AGCACCGAAC AGTTGATCCG TCATGGTCTG
AAGGAGCTGG CGCGATGA
|
|---|
| Protein sequence | MIGKLRGIVD STGEDWAVID VGGVGYHVTC SSRTLRNLPP AGGAVTLSIE TKVSDEAIRL
IGFTTDSERE WFRLLLAVQG VGTRVALGVL GTLAPADLAR AIALDDKKAV SAAPGVGPKV
AARIVTELKD KVPDSMGLSA ALEVGVNGEA VSSVSAPARD AVSALVNLGY PQAQAMGAVA
AAAKRLDDAA STEQLIRHGL KELAR
|
|---|
| |