| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2108 |
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| Symbol | |
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| ID | 5456611 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 2290507 |
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| End bp | 2292561 |
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| Gene Length | 2055 bp |
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| Protein Length | 684 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640877685 |
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| Product | transketolase |
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| Protein accession | YP_001413379 |
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| Protein GI | 154252555 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0021] Transketolase |
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| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 0.159274 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCCAA CAGACAAGTC TGCCCTCGCC GAGAAGGCAA AATCCTCCGC CGCCGCCGAC
AAGGCGCCCG GCGCATCCCA TGACGCCATG GCAAACGCCA TCCGGGCGCT CGCGATGGAT
GCCGTCCAGA AGGCCAACTC AGGCCATCCC GGCATGCCGA TGGGCGCAGC CGACATCGCA
ACCGTCCTTT TCACGAAGTT TCTCAAGATC GACCCGCGCC AGCCCGATTG GCCGGATCGC
GACCGCTTCG TGCTCTCCGC TGGCCATGGC TCGATGCTTC TTTATGCCGT GAATTATCTG
CTCGGCTATG AGGATATGAC GATCGAGCAG ATCAAGAACT TCCGCCAGCT CGGCGCCATC
ACTGCCGGCC ATCCCGAATA TGGCCATGTA GCGGGCGTGG AGACGACCAC GGGCCCGCTC
GGACAGGGCA TTTCGACGGC CGTGGGCATG GCGCTGGCCG AGCGCCTGCT CGCCGCCCGT
TTCGGCGATG AGGTCGTCGA CCATTTTACC TATGTACTGG CATCCGACGG CGACCTGATG
GAAGGCGTGA GCCACGAGGC CATCGGCCTT GCGGGCCATC TGAAGCTTTC CAAGCTCATC
GTTCTCTATG ACGACAATGA AATCACCATC GACGGCGCGC TTTCGCTGTC GGAATCGGGC
GATGCACTGA AACGCTTCGA GGCCGCCGGC TGGAATGCCG TTCGGATCGA CGGCCACAAC
CCCGCCGAGA TCACGGCAGC TATCGAGAAG GCCCAGCAAG CGGACAGGCC AAGCCTTATC
GCCTGCCGGA CCGTCATCGG CTATGGCTCG CCCAATAAGC GCGGCAAATC CTCTTCTCAC
GGTTCGCCGC TCGGCGAGGA AGAGATTTCG CTCGCCCGCG AACTGCTGCA TTGGCAGGCC
GAGCCTTTCG TCATTCCAAG CGAAACCCTC GACGCCTGGC GCATTGCAGG TTTGCGCAAC
GTTAAAGCGC GAAAGGGCTG GGAAGACCGG CTCGCGGCGC TTCCGGCCGA AAAGCGGATC
GATTTCGAGC GCCGCATCGC TGGCGACCTA CCGGCCGAAC TCGGCAAGGC GATCTCGGCC
TTCAAGCAGA AACTCGTTGC CGAAAAGCCA AAATGGGCGA CCCGCAAGTC GTCCGAAGAA
GCGCTCAACG TAATCAACGC CGCCTTGCCC GACACGATTG GCGGCTCGGC GGACCTCACC
GGCTCCAACA ATACGCGTTC GAAGGGCCAG CAGCCGGTAA CGGCCGAGGA TTTCTCCGGT
TCGTTCATCC ATTACGGTAT TCGCGAACAC GGCATGGCAG CCGCCATGAA CGGGCTGGCG
CTGCACAAGG GCTTCATTCC CTATTCGGGC ACCTTTCTCG TCTTTACCGA CTATTGCCGT
CCGGCCATTC GCCTCTCGGC CCTGATGGGC CAGCGCGTCA TCTATGTAAT GACGCATGAC
AGCATCGGTC TCGGCGAAGA CGGCCCGACG CATCAGCCGG TCGAGCATCT GGCAAGCCTG
CGGGCGATGC CGAACCTTCT CGTCTTCCGT CCGGCGGATG CCGTGGAAAC GCTTGAATGC
TGGCAGCTTG CGCTGGAATC GGCGGACGCC CCGTCGATCC TTGCCCTGTC GCGCCAGAAC
CTGCCCGCCA TGCGTATCGA GAACTCCGAA AAGAACCTCT GCGCGCGCGG CGCCTACGAA
TTGGTGGCGG CTTCTTCCAA GGCAAAGGTT TCGCTCCTCG CGACCGGTTC GGAAGTTGAA
ATTGCCGTCG CCGCGCAGCA GATGCTGGAG AAGGAGGGCA TTCCGGCCCG CGTCGTCTCC
ATGCCCTGCC TCGATCTCTT CGACCTGCAA TCACCCGATT TCCAGAAGGA AATGCTCGGC
GAAGGTACGG TGAAAATCGC GATAGAAGCC GCGGTTCGCT ATGGTTGGGA CCGTTACATC
GGCCCTGATG GCGACTTTAT CGGCATGACG GGCTTCGGCG CTTCGGCACC GGCGCCGGAA
CTCTACAAGC ACTTCAACAT TACACCCGAG GCGGCCGTTG CAGCGGCGAA AGCACGCCTC
CAGGAAAAGT CCTAA
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| Protein sequence | MTPTDKSALA EKAKSSAAAD KAPGASHDAM ANAIRALAMD AVQKANSGHP GMPMGAADIA
TVLFTKFLKI DPRQPDWPDR DRFVLSAGHG SMLLYAVNYL LGYEDMTIEQ IKNFRQLGAI
TAGHPEYGHV AGVETTTGPL GQGISTAVGM ALAERLLAAR FGDEVVDHFT YVLASDGDLM
EGVSHEAIGL AGHLKLSKLI VLYDDNEITI DGALSLSESG DALKRFEAAG WNAVRIDGHN
PAEITAAIEK AQQADRPSLI ACRTVIGYGS PNKRGKSSSH GSPLGEEEIS LARELLHWQA
EPFVIPSETL DAWRIAGLRN VKARKGWEDR LAALPAEKRI DFERRIAGDL PAELGKAISA
FKQKLVAEKP KWATRKSSEE ALNVINAALP DTIGGSADLT GSNNTRSKGQ QPVTAEDFSG
SFIHYGIREH GMAAAMNGLA LHKGFIPYSG TFLVFTDYCR PAIRLSALMG QRVIYVMTHD
SIGLGEDGPT HQPVEHLASL RAMPNLLVFR PADAVETLEC WQLALESADA PSILALSRQN
LPAMRIENSE KNLCARGAYE LVAASSKAKV SLLATGSEVE IAVAAQQMLE KEGIPARVVS
MPCLDLFDLQ SPDFQKEMLG EGTVKIAIEA AVRYGWDRYI GPDGDFIGMT GFGASAPAPE
LYKHFNITPE AAVAAAKARL QEKS
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