Gene Plav_2107 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_2107 
Symbol 
ID5454279 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp2289476 
End bp2290483 
Gene Length1008 bp 
Protein Length335 aa 
Translation table11 
GC content62% 
IMG OID640877684 
Productglyceraldehyde-3-phosphate dehydrogenase, type I 
Protein accessionYP_001413378 
Protein GI154252554 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value0.0608592 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGTGC GCGTTGCGAT TAACGGATTC GGTCGGATCG GGCGCCTTGT GCTTCGCGCC 
ATTGCGGAAT CAGGCCGCAA GGACATCGAA GTCGTAGCGA TCAACGATCT TGGCTCTGTC
GATGCGAACG CCCTCCTGCT GAAATATGAC AGCGTGCACG GCCCCTTCCC CGGCAAGATC
AAGACGACGA AGTCGACCAT GGATCTCGGC CGCGGTCCGA TCAAAGTGCT CGCCGAACGC
GATCCCGCGA AGCTCCCCTG GAAGGACCTC GGCGTCGATA TCGCGCTCGA ATGCACGGGT
CTCTTCACCG CCCGTGAAAA GGCGGCGGCG CACCTCACGG CGGGCGCCAG GAAGGTGCTG
ATCTCTGCAC CGGGCGAAAA TTCGGATCTG ACGGTCGTAT ACGGTGTGAA CCACTCGGCC
CTGAAGAAGA GCCACAAGGT CGTCTCCAAC GCCTCCTGCA CCACAAACTG CCTCGCCCCC
GTTGCTCAGG TCCTTCACAA GGCCTGTGGC ATCGAACAGG GCTACATGAC GACGATCCAC
GCCTATACGG GCGACCAGAA CACCGTCGAT ACGCTTCACA AGGACCCGCG CCGGGCCCGC
GCCGCCGGCG TCTCCATGAT TCCGACATCT ACTGGCGCCG CCAAGGCCGT CGGTCTCGTG
CTGCCGGAAC TCCAGGGCAA GCTCGACGGC ACGTCGATCC GCGTACCCAC TCCGAACGTC
TCGGTGATCG ACCTCGTCTT CACGTCCAAG AAAAAGACTA CGGCGGAAGA AGTGAACGCC
GCCATCATCG CCGCCGCGAA GGGCCCCTTG AAAGGCATTC TCGCGACGAC GAACGAGCCG
AACGTCTCGA TCGACTTCAA CCATAACCCG GCCTCCTCCA CCTTCGATCT GACGCAGACG
CAGGTGATCG ACGGCAAGCT CGTGCGCGTG CTGAGCTGGT ACGACAATGA GTGGGGCTTC
TCGAACCGTA TGGGCGACAC CGCTGTCGCC ATGGGCAAGC TTCTCTGA
 
Protein sequence
MAVRVAINGF GRIGRLVLRA IAESGRKDIE VVAINDLGSV DANALLLKYD SVHGPFPGKI 
KTTKSTMDLG RGPIKVLAER DPAKLPWKDL GVDIALECTG LFTAREKAAA HLTAGARKVL
ISAPGENSDL TVVYGVNHSA LKKSHKVVSN ASCTTNCLAP VAQVLHKACG IEQGYMTTIH
AYTGDQNTVD TLHKDPRRAR AAGVSMIPTS TGAAKAVGLV LPELQGKLDG TSIRVPTPNV
SVIDLVFTSK KKTTAEEVNA AIIAAAKGPL KGILATTNEP NVSIDFNHNP ASSTFDLTQT
QVIDGKLVRV LSWYDNEWGF SNRMGDTAVA MGKLL