| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2089 |
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| Symbol | |
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| ID | 5456506 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 2272763 |
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| End bp | 2273593 |
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| Gene Length | 831 bp |
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| Protein Length | 276 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640877666 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001413360 |
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| Protein GI | 154252536 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.185872 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.0000125896 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCTTCCG GCAATACACT CAGCGGCAAG GTCGCGATCG TCACCGGCGG CGCCAGCGGC
ATCGGGCGCG CCATAGCGCA TGCCTTCGCG AATGAAGGCG CGAAAGTCGT CATCGCCGAT
GTCGAGGAAG AGACGGGCGA GAAGACCGCC GCCGAAATCG TGGAAGGTGG CGGCGAGGCG
ATCTTCCGCT ATTGCGATGT CGGCGAGCGT CTCGATGTGC GCAATCTCGT CTGCGCGGCG
GGCGATGCTT TCGAGAAGGT CGACATCCTC GTCAACAATG CCGGCGTCGT CTCGAAGGGC
AGCGATTTCC TGACGCTTGA GGAAGAAGAA TTCGATCGCG TCATCCGCAT CAATCTGAAG
GGCCATTTCC TTGTCGGCCA GGCGGTGGCG CAGCGCATGG TCGCGCAGAT CGAGGAAGGC
CATGCGCCCG GCACCATCAT CAACATGTCG TCGATCAACG CCGTCGTCGC GATCCCCGCG
CAGGCCGCCT ATTCGGCGTC GAAAGGCGGC ATCAAGCAGC TCACCGAAGC CATGGCGCTC
TCGCTCGCGC CCTACGGCAT CCGTGTCAAC GCCATCGGTC CGGGCACGAT CCAGACCGCG
ATGGCCGGCA ACGTCAATGA GAACCCGGGC GCGAACAAGA TGCTCCTGTC GCGCACGCCG
CTCGGCCGCG TCGGCCAGCC GGAGGAAATC GCCTCCATCG CCGTCTTCCT CGCCTCGGAT
GGCGCCAGCT ACATGACCGG CCAGACCGTC TACGCCGATG GCGGCCGCCT CTCGCTCAAC
TACACGGCCT TGCCGATGGC GAAAAAGAAG GGCGAGGAGA AGAAGGAGTA G
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| Protein sequence | MASGNTLSGK VAIVTGGASG IGRAIAHAFA NEGAKVVIAD VEEETGEKTA AEIVEGGGEA
IFRYCDVGER LDVRNLVCAA GDAFEKVDIL VNNAGVVSKG SDFLTLEEEE FDRVIRINLK
GHFLVGQAVA QRMVAQIEEG HAPGTIINMS SINAVVAIPA QAAYSASKGG IKQLTEAMAL
SLAPYGIRVN AIGPGTIQTA MAGNVNENPG ANKMLLSRTP LGRVGQPEEI ASIAVFLASD
GASYMTGQTV YADGGRLSLN YTALPMAKKK GEEKKE
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