Gene Plav_2064 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_2064 
Symbol 
ID5456770 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp2250386 
End bp2252590 
Gene Length2205 bp 
Protein Length734 aa 
Translation table11 
GC content61% 
IMG OID640877641 
ProductTonB-dependent siderophore receptor 
Protein accessionYP_001413335 
Protein GI154252511 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID[TIGR01783] TonB-dependent siderophore receptor 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.000000000000430928 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCTTTTT TGTCCGGGAT GAAGCCGCGC GGAAGCCGGG TTCTCTGCAC CATCCTTCTC 
GCGTCGGTCA GCACCGCGGC GCTTGCCGCC ATGCCGGCCC TGGCCCAGGA AGAGGCCGGC
GATGCGGCTG TCGAGCTTGC GCCCATCAAA GTTGAAAGCG ACAAGGATGC TCTCCCGGCG
CCTTATGCCG GCGGCCAGGT CGCCGCGGGC GCTCGTATCG GCGTCCTCGG CAATCAGGAC
ATCATGGACG TGCCCTTCAG CGTTACGTCC TACACGGAAG AGCTGATCCG CAACCAGCAG
GCGGAAACGA TCGGCGACGT GGTGGCGAAC GATCCCTCCG TCCGGACAGG CTATGGCTTC
AGCATTTTCG GCGAGCAGTT TGTCATTCGC GGTTTTCCGC TCAGCAACGA AGACATCGCC
TTCAACGGCA TGTACGGCAT TTCTCCGCGC CAGATTGTCG GCACGACGAT GTATGAGTGC
GTGGAAGTCT TGAAAGGCGC GAGCGCCTTT CTCAACGGCG CGCCGCCCAG CGGCTCGGGC
ACCGGCGGCA GCATCAATCT CGTACCGAAA CGCGCTACCG ACGTGCCCAT TCGCCGCGTC
ACCGGCAGCT ACTCCATGAA CAGCCAGTTC GGCGCACATG CGGATGTCGG CCAGCGTTTC
GGCGCCAATA ATGCATGGGG TATCAGGATC AACGTGGCTG GCCGCGACGG CGAGACGGCT
ATCGAAAATG AAGACCGGCA GTACCTGCTG GGCTCCCTCG CACTGGACTA CCGGGGCGAA
CGGTTGCGTC TCAGCCTCGA TGCCGCCTCG CAGCGCCAGC TTGTGGAGCA GGGCCGCACC
GTTGTGCAGC TCGCGGGCGG TATTGCCGTA CCTGAGCCGG TCGACTCCGA CCACAACTAT
GCTCAGGAGT GGGCCTATTA CGACATGCAC GACACCTTCG CCCTGTTGCA GGGCGAATAT
GACATCACGG ATTTTGTTAC GGCTTATGCC GGTTTCGGCG CCCGCGAAAT GCGCGAAGAT
AGCGATGGTT CAACGCCCCG CGTTTCCGCG AGCGACGGCA CGGCAACGAT GAGCCGTTTC
ACGGTGCCGC GCGAAGATAC GGTCTATTCG GGTCAGGGCG GCCTTCGCTT CGAGTTCGAG
ACAGGGCCGC TGCGGCACAA CCTGAACCTC GGTGCGTCAT GGCTGGAACA GAAGAATTAT
AACTCTTTCG AGTTCACTGG CGGCACGCCG ACCAATATCT ACGACCCGGT ACTCTTTCCC
CGGCCTGCCG GGGGCACCCG GTCAGGCAGC TTCAGCGATC TTCCGCTGTT TAGCTATAGC
GAACTCACGA GCACCTTCCT TTCGGACACC ATCGTCTTCC TGGACGACAA GGTGCATTTG
ACGCTCGGTC TGCGTGATCA GCGCATCCAG ACGGAAGGCT ATGACCGCAC GACGGGTGCC
GTCACCAGCA GCTATGACGA GTCGGAAATT TCCCCCGTTG CCGGACTGGC GGTCAATCTC
ACCGAACAGG TGACCGTCTA CGCAAACCGT ATTGAAGGTC TCGCGCAGGG ACCGACGGCG
CCGACAACGG CGGGCGTTCT CAATCCGGGC GAAATTTTCG CGCCCTATAC CTCGGTTCAG
TACGAATTCG GCGGCAAGGT CGATCTCGGA AAGGTTGGCT TCGGCGCCGC CTATTTTGAA
ACGGAAAAGC CTCTGGGCAT TTTGACGCCG GTAGGTGGCG GCAATTCCGT TTTCGGGGTC
GATGGCGAGC AGCGTAACCG GGGCGTCGAG CTCAACTTCT TCGGCGAGCC GGCCGAGGGC
ATCCGGCTGC TGGGCGGCAT TACCTTCCTC GATGCAGAGC TGACATCGAC CGCGAGTGGC
GCAAACGATG GCAATCAGGT GCGCGGTGTG CCTGACTATC AGGCCAATCT GGGTGCGGAG
TGGGACATGC CGTTCCTGCC CGGCATGACG GCCTTGGCGC GTGTGCTCCA CACCGACAGC
CAGTATGTGG ATGACGCCAA TACCCAGAAA ATATCGGATT GGACTCGCCT CGACATCGGA
GCCCGCTATA CGGCAAACTT CGACCGTCAG CCCGTGACGT TCAATCTCTT CATCGAGAAC
GTGACGAATG AATCCTACTG GGCGGCGGCT TCCGCCGACA TCGCGGGTTA CCTCACCATG
GGCGATCCGC TGACGGCGAA GTTCTCCGTC TCGACGGAAT TCTGA
 
Protein sequence
MSFLSGMKPR GSRVLCTILL ASVSTAALAA MPALAQEEAG DAAVELAPIK VESDKDALPA 
PYAGGQVAAG ARIGVLGNQD IMDVPFSVTS YTEELIRNQQ AETIGDVVAN DPSVRTGYGF
SIFGEQFVIR GFPLSNEDIA FNGMYGISPR QIVGTTMYEC VEVLKGASAF LNGAPPSGSG
TGGSINLVPK RATDVPIRRV TGSYSMNSQF GAHADVGQRF GANNAWGIRI NVAGRDGETA
IENEDRQYLL GSLALDYRGE RLRLSLDAAS QRQLVEQGRT VVQLAGGIAV PEPVDSDHNY
AQEWAYYDMH DTFALLQGEY DITDFVTAYA GFGAREMRED SDGSTPRVSA SDGTATMSRF
TVPREDTVYS GQGGLRFEFE TGPLRHNLNL GASWLEQKNY NSFEFTGGTP TNIYDPVLFP
RPAGGTRSGS FSDLPLFSYS ELTSTFLSDT IVFLDDKVHL TLGLRDQRIQ TEGYDRTTGA
VTSSYDESEI SPVAGLAVNL TEQVTVYANR IEGLAQGPTA PTTAGVLNPG EIFAPYTSVQ
YEFGGKVDLG KVGFGAAYFE TEKPLGILTP VGGGNSVFGV DGEQRNRGVE LNFFGEPAEG
IRLLGGITFL DAELTSTASG ANDGNQVRGV PDYQANLGAE WDMPFLPGMT ALARVLHTDS
QYVDDANTQK ISDWTRLDIG ARYTANFDRQ PVTFNLFIEN VTNESYWAAA SADIAGYLTM
GDPLTAKFSV STEF