Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_2064 |
Symbol | |
ID | 5456770 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 2250386 |
End bp | 2252590 |
Gene Length | 2205 bp |
Protein Length | 734 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640877641 |
Product | TonB-dependent siderophore receptor |
Protein accession | YP_001413335 |
Protein GI | 154252511 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.000000000000430928 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCTTTTT TGTCCGGGAT GAAGCCGCGC GGAAGCCGGG TTCTCTGCAC CATCCTTCTC GCGTCGGTCA GCACCGCGGC GCTTGCCGCC ATGCCGGCCC TGGCCCAGGA AGAGGCCGGC GATGCGGCTG TCGAGCTTGC GCCCATCAAA GTTGAAAGCG ACAAGGATGC TCTCCCGGCG CCTTATGCCG GCGGCCAGGT CGCCGCGGGC GCTCGTATCG GCGTCCTCGG CAATCAGGAC ATCATGGACG TGCCCTTCAG CGTTACGTCC TACACGGAAG AGCTGATCCG CAACCAGCAG GCGGAAACGA TCGGCGACGT GGTGGCGAAC GATCCCTCCG TCCGGACAGG CTATGGCTTC AGCATTTTCG GCGAGCAGTT TGTCATTCGC GGTTTTCCGC TCAGCAACGA AGACATCGCC TTCAACGGCA TGTACGGCAT TTCTCCGCGC CAGATTGTCG GCACGACGAT GTATGAGTGC GTGGAAGTCT TGAAAGGCGC GAGCGCCTTT CTCAACGGCG CGCCGCCCAG CGGCTCGGGC ACCGGCGGCA GCATCAATCT CGTACCGAAA CGCGCTACCG ACGTGCCCAT TCGCCGCGTC ACCGGCAGCT ACTCCATGAA CAGCCAGTTC GGCGCACATG CGGATGTCGG CCAGCGTTTC GGCGCCAATA ATGCATGGGG TATCAGGATC AACGTGGCTG GCCGCGACGG CGAGACGGCT ATCGAAAATG AAGACCGGCA GTACCTGCTG GGCTCCCTCG CACTGGACTA CCGGGGCGAA CGGTTGCGTC TCAGCCTCGA TGCCGCCTCG CAGCGCCAGC TTGTGGAGCA GGGCCGCACC GTTGTGCAGC TCGCGGGCGG TATTGCCGTA CCTGAGCCGG TCGACTCCGA CCACAACTAT GCTCAGGAGT GGGCCTATTA CGACATGCAC GACACCTTCG CCCTGTTGCA GGGCGAATAT GACATCACGG ATTTTGTTAC GGCTTATGCC GGTTTCGGCG CCCGCGAAAT GCGCGAAGAT AGCGATGGTT CAACGCCCCG CGTTTCCGCG AGCGACGGCA CGGCAACGAT GAGCCGTTTC ACGGTGCCGC GCGAAGATAC GGTCTATTCG GGTCAGGGCG GCCTTCGCTT CGAGTTCGAG ACAGGGCCGC TGCGGCACAA CCTGAACCTC GGTGCGTCAT GGCTGGAACA GAAGAATTAT AACTCTTTCG AGTTCACTGG CGGCACGCCG ACCAATATCT ACGACCCGGT ACTCTTTCCC CGGCCTGCCG GGGGCACCCG GTCAGGCAGC TTCAGCGATC TTCCGCTGTT TAGCTATAGC GAACTCACGA GCACCTTCCT TTCGGACACC ATCGTCTTCC TGGACGACAA GGTGCATTTG ACGCTCGGTC TGCGTGATCA GCGCATCCAG ACGGAAGGCT ATGACCGCAC GACGGGTGCC GTCACCAGCA GCTATGACGA GTCGGAAATT TCCCCCGTTG CCGGACTGGC GGTCAATCTC ACCGAACAGG TGACCGTCTA CGCAAACCGT ATTGAAGGTC TCGCGCAGGG ACCGACGGCG CCGACAACGG CGGGCGTTCT CAATCCGGGC GAAATTTTCG CGCCCTATAC CTCGGTTCAG TACGAATTCG GCGGCAAGGT CGATCTCGGA AAGGTTGGCT TCGGCGCCGC CTATTTTGAA ACGGAAAAGC CTCTGGGCAT TTTGACGCCG GTAGGTGGCG GCAATTCCGT TTTCGGGGTC GATGGCGAGC AGCGTAACCG GGGCGTCGAG CTCAACTTCT TCGGCGAGCC GGCCGAGGGC ATCCGGCTGC TGGGCGGCAT TACCTTCCTC GATGCAGAGC TGACATCGAC CGCGAGTGGC GCAAACGATG GCAATCAGGT GCGCGGTGTG CCTGACTATC AGGCCAATCT GGGTGCGGAG TGGGACATGC CGTTCCTGCC CGGCATGACG GCCTTGGCGC GTGTGCTCCA CACCGACAGC CAGTATGTGG ATGACGCCAA TACCCAGAAA ATATCGGATT GGACTCGCCT CGACATCGGA GCCCGCTATA CGGCAAACTT CGACCGTCAG CCCGTGACGT TCAATCTCTT CATCGAGAAC GTGACGAATG AATCCTACTG GGCGGCGGCT TCCGCCGACA TCGCGGGTTA CCTCACCATG GGCGATCCGC TGACGGCGAA GTTCTCCGTC TCGACGGAAT TCTGA
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Protein sequence | MSFLSGMKPR GSRVLCTILL ASVSTAALAA MPALAQEEAG DAAVELAPIK VESDKDALPA PYAGGQVAAG ARIGVLGNQD IMDVPFSVTS YTEELIRNQQ AETIGDVVAN DPSVRTGYGF SIFGEQFVIR GFPLSNEDIA FNGMYGISPR QIVGTTMYEC VEVLKGASAF LNGAPPSGSG TGGSINLVPK RATDVPIRRV TGSYSMNSQF GAHADVGQRF GANNAWGIRI NVAGRDGETA IENEDRQYLL GSLALDYRGE RLRLSLDAAS QRQLVEQGRT VVQLAGGIAV PEPVDSDHNY AQEWAYYDMH DTFALLQGEY DITDFVTAYA GFGAREMRED SDGSTPRVSA SDGTATMSRF TVPREDTVYS GQGGLRFEFE TGPLRHNLNL GASWLEQKNY NSFEFTGGTP TNIYDPVLFP RPAGGTRSGS FSDLPLFSYS ELTSTFLSDT IVFLDDKVHL TLGLRDQRIQ TEGYDRTTGA VTSSYDESEI SPVAGLAVNL TEQVTVYANR IEGLAQGPTA PTTAGVLNPG EIFAPYTSVQ YEFGGKVDLG KVGFGAAYFE TEKPLGILTP VGGGNSVFGV DGEQRNRGVE LNFFGEPAEG IRLLGGITFL DAELTSTASG ANDGNQVRGV PDYQANLGAE WDMPFLPGMT ALARVLHTDS QYVDDANTQK ISDWTRLDIG ARYTANFDRQ PVTFNLFIEN VTNESYWAAA SADIAGYLTM GDPLTAKFSV STEF
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