| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2052 |
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| Symbol | |
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| ID | 5455356 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 2239316 |
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| End bp | 2241160 |
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| Gene Length | 1845 bp |
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| Protein Length | 614 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640877629 |
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| Product | pepF/M3 family oligoendopeptidase |
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| Protein accession | YP_001413323 |
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| Protein GI | 154252499 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1164] Oligoendopeptidase F |
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| TIGRFAM ID | [TIGR02290] oligoendopeptidase, pepF/M3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.841739 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.00000309933 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTGCGTC TCAAGCCCGT TTCTGCCCCT GCCTCATCCG TGAGTAACGC AAAAGATCAG
CAGGAATTGC TGGGCGAGCT GCCGGTCTGG AACCTGGGCG ATCTTTATTC GGCACCAGAT
GCGCCTGAAG TTAAAGCGGA TCTCCGGTGG GCGGCGGAGG CGGCGGCGGC TTTCAACAAG
CTCTACAAGG GCCGCATCGG CGCGCTGGCA GCGGCGCCCG AGGGCGGCAA GGAGATTGCC
GCGGCCTTGA AGGCCTATGA AGAGATCGAG GACAAGCTCG GCCGGTTGAT CTCCTTTGCC
GGGCTTCTCT ATGCGCAGGA CAGCGTCAAT CCGGCCTATG CCAAGTTCTA TGGCGACATG
CAGGGCCAGA TCACCACGAT TTCGACGGAC CTTCTCTTTT TCGCTCTCGA ACTGAACCGG
GTTGAAGACG ACGTGCTGGC TAAGGCTCTC GAAGATCCGG CGCTCGGCCA CTACGCGCCT
TGGCTGCGCG ACCTGCGCGC GATGCGGCCT TATCAGCTTT CCGATGAGCT CGAAACGCTT
CTGCATGAGA AAAGCCTGAC GGGGCATGCC GCATGGAACC GCCTTTTCGA CGAAACGATG
GCGCGGCTTA CATTCGAAGT CGATAGCGAG ACGCTGACGG TCGAAGGTGC CCTGCATCTT
CTTTCTGACC ATGATGCGGC GAAGCGCGAA GTAGCGGCGC ATGCGCTTGC GAAGACCTTC
AAGGCGAACA CGCCGCTTTT CACGCTCATC ACCAATACGC TTGCAAAGGA CAAGGAGATC
GAGGATCGCC TGCGCGGTTT TGACGACATC GCGCAATCGC GGCATATCGC CAATCGCGTG
GAGCCGGAAG TCGTGGAGGC GCTGGTGGAT GCAGTGCGGC GCGCCTATCC CGATCTCTCG
CATCGCTACT ATGCGATGAA AGCCAAATGG CTCGGTCTCG ATCGCCTGGA ATATTGGGAC
CGCAATGCGC CTTTGCCACA TTCAGACGAT GCAGTGATCC CCTGGAATCA GGCGCGGGAT
ACAGTACTCG ACGCCTATCG CGGCTTCACG CCGGACATGG CGAAGATCGC CGGTCAGTTT
TTCGACAAGG GCTGGATCGA TGCGCCCATG CGGGCGGGCA AGGCGACCGG CGCCTTCGCT
CATCCGACCG TGCCGAGCGC ACATCCCTAT GTGCTGGTCA ATTACCAGGG CAAGACGCGC
GACGTGATGA CGCTTGCGCA TGAACTCGGT CACGGCGTTC ACCAGGTGCT CGCGGCGAAG
CAAGGTCCGC TCATGGCCGA TACACCGCTG ACGCTTGCCG AAACGGCGAG TGTCTTCGGC
GAGATGCTCA CCTTCCGCAA ACTTCTCGCC GGAGCGCAGA CGAAGGAACG CCGCAAGGCG
ATGCTCGCCT CCAAGGTCGA GGACATGCTC AACACGGTTG TCCGCCAGAC AGCGTTCTAC
ACGTTCGAGC GCCGTGTTCA CACCGCGCGC CGGGAAGGCG AACTGACATC GGAAGATATC
GGCCGGATCT GGCTCGACGT GCAAGGCGAG AGCCTTGGTC CGGCCATCCA TCTCGGCGAA
GGCTACGAGA CCTACTGGTG CTACATCTCT CACTTCATAC ATGCGCCGTT CTATGTCTAC
GCCTATGCCT TCGGCGACTG CCTCGTGAAC TCGCTCTATG CGGTCTACGA GCAGGCACAG
GAAGGTTTCG CGGAACGCTA TTTCGAAATG CTTTCCGCCG GCGGCACGTT GCGCCACAAG
GAACTGCTCG CTCCGTTCGG GCTCGATGCG AGCGACCCTG CCTTCTGGGA CAAGGGTCTC
TCCATGATCC GCGGCTTCAT CGACGAGCTT GAGGCGATGG AATGA
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| Protein sequence | MLRLKPVSAP ASSVSNAKDQ QELLGELPVW NLGDLYSAPD APEVKADLRW AAEAAAAFNK
LYKGRIGALA AAPEGGKEIA AALKAYEEIE DKLGRLISFA GLLYAQDSVN PAYAKFYGDM
QGQITTISTD LLFFALELNR VEDDVLAKAL EDPALGHYAP WLRDLRAMRP YQLSDELETL
LHEKSLTGHA AWNRLFDETM ARLTFEVDSE TLTVEGALHL LSDHDAAKRE VAAHALAKTF
KANTPLFTLI TNTLAKDKEI EDRLRGFDDI AQSRHIANRV EPEVVEALVD AVRRAYPDLS
HRYYAMKAKW LGLDRLEYWD RNAPLPHSDD AVIPWNQARD TVLDAYRGFT PDMAKIAGQF
FDKGWIDAPM RAGKATGAFA HPTVPSAHPY VLVNYQGKTR DVMTLAHELG HGVHQVLAAK
QGPLMADTPL TLAETASVFG EMLTFRKLLA GAQTKERRKA MLASKVEDML NTVVRQTAFY
TFERRVHTAR REGELTSEDI GRIWLDVQGE SLGPAIHLGE GYETYWCYIS HFIHAPFYVY
AYAFGDCLVN SLYAVYEQAQ EGFAERYFEM LSAGGTLRHK ELLAPFGLDA SDPAFWDKGL
SMIRGFIDEL EAME
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