| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2042 |
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| Symbol | |
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| ID | 5453765 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 2228323 |
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| End bp | 2229462 |
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| Gene Length | 1140 bp |
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| Protein Length | 379 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640877619 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_001413313 |
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| Protein GI | 154252489 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.419009 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.00181161 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGATACCG GCATGGACAT GCCGTTCAAG GACGCGGAGA ACGCGGCGCT TTTCCGCATG
CTGATTGCGA CGGCGGTGGA TGGCATCATC GTCATCGACG CCGCCGGTAA TGTGCGGCTC
TACAACCAGG CCTGCGAGCG CCTGTTCGGC TATACACCGG AGGAAGTTCT CGGCCGCAAC
ATCAAGATGC TGATGCCCTC GCCTTACCGC GACGAGCATG ACGGCTATCT CAGCGCCTAT
CACAAAACCG CCAACCGCAA GATCATCGGC ATCGGCCGCG AGGTGATGGG TCAGATGAAG
GACGGCTCGA CCTTCCCCAT GTATCTCTCC GTGGGAGAGG GCGTCTTCGA AAACCAGCGC
ATCTTCGTCG GCATCATTCA CGACACATCA GAGCGCCACT TCGCCGCCGG CCGCCTGCGG
GAAGTGCAGG AAGAGCTTGT CCACGTCTCG CGTACGAACG AAATGGGCCA GATGACCTCG
GCCCTCGCGC ATGAGCTGAA CCAGCCGCTC ACCGCCATCA TGAATTATGT CCGCGCGGCG
GCACGGACGA TCGAGGGGCT CGACGATCCG GCTGCAATCC GCGCGCGTGA ACTCATCGAC
AAGGCCGCCG AGCAGACCGG CCGCGCCGGC CAGATCATCC GGCGGCTGCG CGATTTCGTG
GAGAAACGGG AAGCCTTCCG CGCCGAGGAA GACCTGAACC AGACGATCAG GGAGGCGATT
GCGCTCGCCC TGATCGGCGC CTCGGACAGC AATGTGAAGG TCGCTGTCGA TTTCGACCCG
AACATTTCCC CTGTCATCAT GGACCGTATC CAGATACAGC AGGTCGTCGT CAATCTCGTC
CGCAACGCCG TCGAGGCAAT GCAGAGCGTC GAGCGGCGCG AAATCCTCAT AAAGACGGGA
ACGGACGAAC CCGGCTATAT CTACGCGTCC TTTGCCGATA CCGGACCAGG ACTGCCGGAA
GAGGTGGCGA GCCGGCTGTT CCAGCCCTTC GTCACGACCA AGGAGAAGGG AATGGGCATC
GGCCTCTCGA TCTGCCAGAC CATCGTGAAA GCACATGGCG GCCGCCTCTG GGCCGCGCGC
GACGGAAGCG ACGGCACCAC CTTCCGCTTC CGTCTGCCCG CAGCGGCGCA GAACCTATGA
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| Protein sequence | MDTGMDMPFK DAENAALFRM LIATAVDGII VIDAAGNVRL YNQACERLFG YTPEEVLGRN
IKMLMPSPYR DEHDGYLSAY HKTANRKIIG IGREVMGQMK DGSTFPMYLS VGEGVFENQR
IFVGIIHDTS ERHFAAGRLR EVQEELVHVS RTNEMGQMTS ALAHELNQPL TAIMNYVRAA
ARTIEGLDDP AAIRARELID KAAEQTGRAG QIIRRLRDFV EKREAFRAEE DLNQTIREAI
ALALIGASDS NVKVAVDFDP NISPVIMDRI QIQQVVVNLV RNAVEAMQSV ERREILIKTG
TDEPGYIYAS FADTGPGLPE EVASRLFQPF VTTKEKGMGI GLSICQTIVK AHGGRLWAAR
DGSDGTTFRF RLPAAAQNL
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