| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2028 |
|---|
| Symbol | |
|---|
| ID | 5455228 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 2215037 |
|---|
| End bp | 2215654 |
|---|
| Gene Length | 618 bp |
|---|
| Protein Length | 205 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640877605 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001413299 |
|---|
| Protein GI | 154252475 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.287446 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 0.576518 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCGGCGG CGGGCTCTCG CCCTATCATC GGCGGCATGA TCAAACGCCT GCTCATCTGC
CTCCTGTTGC TGCCGGGCCT TTCTCCGGCG GCGACGGCCA TCCATGCAGC GGAGATGGCG
GCGGGCGAAG AAACGCGCGA GGCCGTGCTC GACAGTCTCT TCGAGCGGCT CCGCACCGCC
AAGGACGAGA CGGAAGGCCG TGCGGTCGAA AGTGCCATCC AGTCCTTCTG GCTGCAGTCG
GGCAGTCCGA GCATCGACCT GCTCATGCAG CGCGGGCTCG ATGCGCTGCA TGAGCAGGAC
TATGACCGGG CCCATTTTTA TTTCGATGAG GTGGTGGTCC TCTCGCCCGG CTTCGCGGAG
GGATGGAACA AGCGCGCAAC CATTCATTAC ATCCGCGAGG ATTATTCGTC GGCGCTGCGC
GATATTGAGC AGACGCTCCG TCTCGAGCCT CGTCATTTCG AGGCACTGGC GGGGCTCGGC
ATCCTCCTGG AGGAACTCGG CGACAAGAAA GGCGCGCTCG ATGCCTATCG TCGCGCGCTT
GCGCTCAATC CCTGGCTGCG CGACGGCGAT GCACGCATCA AGCCGCTCCA GCTGGATGTC
GAGGGCAGGG GCATCTGA
|
|---|
| Protein sequence | MAAAGSRPII GGMIKRLLIC LLLLPGLSPA ATAIHAAEMA AGEETREAVL DSLFERLRTA
KDETEGRAVE SAIQSFWLQS GSPSIDLLMQ RGLDALHEQD YDRAHFYFDE VVVLSPGFAE
GWNKRATIHY IREDYSSALR DIEQTLRLEP RHFEALAGLG ILLEELGDKK GALDAYRRAL
ALNPWLRDGD ARIKPLQLDV EGRGI
|
|---|
| |