Gene Plav_2026 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_2026 
Symbol 
ID5454692 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp2213262 
End bp2213873 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content61% 
IMG OID640877603 
ProductHAD family hydrolase 
Protein accessionYP_001413297 
Protein GI154252473 
COG category[R] General function prediction only 
COG ID[COG1011] Predicted hydrolase (HAD superfamily) 
TIGRFAM ID[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.151114 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones53 
Fosmid unclonability p-value0.583157 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCGAAA AGCTCGATAC CGTTGTTTTC GACATCGGAA ATGTGCTGAT CCAGTGGGAT 
CCGCGCCATC TCTACCGTTC CATCTTCCCG GACGAGGCAG AGATGGAGGC TTTTCTCGCC
AATGTCTGCA CCATGGAATG GCATATCGAG CATGATCGCG GCGTGCCCTT TGCCGATAAT
GCGCTCGGAC TCAAGGCGCG GCATCCGGCC CATGCAGATC TCATCGACCT CTGGGGCGCC
CGCTATCTTG AGATGACGCC TGATCGTGTG CCGGGCACGG CGGCCCTGCT TCGCGGCCTG
AAGGCCGGCG GTATCGCCCT TCACGGGCTC ACCAACATGC CGTCCCCCGT CTTTCCGGCG
CTTTGCGAGC GCTATCCTGA GCTTCTGCTT CTGGAGCAGA CGGTCGTTTC GGGCGACGAA
GGCATTCTCA AGCCCGATCC CCGCATTTAC CGGATATTGA TCGGCCGCGC GGGGATCGAC
CCCTCGCGCA CGCTTTTCAT CGACGATTCG GCCCGCAATG TGGAAACAGC CGCCTCGCTC
GGCTTCCACA CGCATATCTT CACCGGGGCG GATGGCCTTG AAGGTGCATT GCGCGGTCAT
GGGCTGATTT AG
 
Protein sequence
MGEKLDTVVF DIGNVLIQWD PRHLYRSIFP DEAEMEAFLA NVCTMEWHIE HDRGVPFADN 
ALGLKARHPA HADLIDLWGA RYLEMTPDRV PGTAALLRGL KAGGIALHGL TNMPSPVFPA
LCERYPELLL LEQTVVSGDE GILKPDPRIY RILIGRAGID PSRTLFIDDS ARNVETAASL
GFHTHIFTGA DGLEGALRGH GLI