Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_2026 |
Symbol | |
ID | 5454692 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 2213262 |
End bp | 2213873 |
Gene Length | 612 bp |
Protein Length | 203 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640877603 |
Product | HAD family hydrolase |
Protein accession | YP_001413297 |
Protein GI | 154252473 |
COG category | [R] General function prediction only |
COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.151114 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 0.583157 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGCGAAA AGCTCGATAC CGTTGTTTTC GACATCGGAA ATGTGCTGAT CCAGTGGGAT CCGCGCCATC TCTACCGTTC CATCTTCCCG GACGAGGCAG AGATGGAGGC TTTTCTCGCC AATGTCTGCA CCATGGAATG GCATATCGAG CATGATCGCG GCGTGCCCTT TGCCGATAAT GCGCTCGGAC TCAAGGCGCG GCATCCGGCC CATGCAGATC TCATCGACCT CTGGGGCGCC CGCTATCTTG AGATGACGCC TGATCGTGTG CCGGGCACGG CGGCCCTGCT TCGCGGCCTG AAGGCCGGCG GTATCGCCCT TCACGGGCTC ACCAACATGC CGTCCCCCGT CTTTCCGGCG CTTTGCGAGC GCTATCCTGA GCTTCTGCTT CTGGAGCAGA CGGTCGTTTC GGGCGACGAA GGCATTCTCA AGCCCGATCC CCGCATTTAC CGGATATTGA TCGGCCGCGC GGGGATCGAC CCCTCGCGCA CGCTTTTCAT CGACGATTCG GCCCGCAATG TGGAAACAGC CGCCTCGCTC GGCTTCCACA CGCATATCTT CACCGGGGCG GATGGCCTTG AAGGTGCATT GCGCGGTCAT GGGCTGATTT AG
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Protein sequence | MGEKLDTVVF DIGNVLIQWD PRHLYRSIFP DEAEMEAFLA NVCTMEWHIE HDRGVPFADN ALGLKARHPA HADLIDLWGA RYLEMTPDRV PGTAALLRGL KAGGIALHGL TNMPSPVFPA LCERYPELLL LEQTVVSGDE GILKPDPRIY RILIGRAGID PSRTLFIDDS ARNVETAASL GFHTHIFTGA DGLEGALRGH GLI
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