Gene Plav_2010 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_2010 
Symbol 
ID5454220 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp2198265 
End bp2198678 
Gene Length414 bp 
Protein Length137 aa 
Translation table11 
GC content61% 
IMG OID640877587 
Producthypothetical protein 
Protein accessionYP_001413281 
Protein GI154252457 
COG category[R] General function prediction only 
COG ID[COG1545] Predicted nucleic-acid-binding protein containing a Zn-ribbon 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value0.392361 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones77 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGGAAT ATAATCGCCC GCTGCCCTTG CCCACGCCCG AAACCCGGCA TTTCTGGGAA 
GGCTGCAGGC AAGGCGAACT GAAACTGCAG CGCTGCAAAT CGTGCAAGGA AAGCTACTTT
CCTCCCCGCC CCTTCTGCCC CGCCTGCGGC TCGCGCGATG TGGAAGTCTA CAAGGCGAGC
GGCAAGGCGA CACTTTACAG CTACGTCATC AACCATCGCC CGAGGCCCGA TTTCGGTGAA
GAACCGCATT CGATTGCGGT GGTCGAACTC GCCGAGGGCC CGCGCATGAT GACCAACATC
GTGGACTGCC CGCAGACGCC GGAAGCGCTG CAACTCGACA TGGCGCTCGA AGTCACCTTC
GAGCAGGCCA ACGAGGAAAT CAGCCTGCCG AAGTTCAAGC CGGCGAAAGG GTGA
 
Protein sequence
MAEYNRPLPL PTPETRHFWE GCRQGELKLQ RCKSCKESYF PPRPFCPACG SRDVEVYKAS 
GKATLYSYVI NHRPRPDFGE EPHSIAVVEL AEGPRMMTNI VDCPQTPEAL QLDMALEVTF
EQANEEISLP KFKPAKG