| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1999 |
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| Symbol | |
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| ID | 5454282 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 2183360 |
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| End bp | 2184532 |
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| Gene Length | 1173 bp |
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| Protein Length | 390 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640877576 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001413270 |
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| Protein GI | 154252446 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.00132105 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 87 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCCGCC ACCACAGGTG GAACAAAGCC CCGAGAGCGA CATTCATGCA GTCTTTGAGA
GAGCTTCCTC CGCGTACACT GATCATTGGT GCATTGGCCG CGCTTGTGGT GCTTGGTTTT
ATCTACCTGG TCTATGCACG CCTTTCCGGG CAGCAGGGGC AGCAGGCCTT CCCGCCGCCG
GTGGTCGAGG TCGTGGAGGC TCCGCAGCAG CCGGTTCAGG TGAAGGTCTC TGCTCTCGGG
ACGCTTCAGG CCGATCAGGC GATCACGATC AGACCCGAGA TAAACGGCAT CGTTACCAGC
ATCGATTTCG TCGACGGTCA GCGGATGGAT ACGGGCGATC TCGTCATCAC CATAAATGAT
GAGGATCTGA AGGCGCGGTT GATGCAGGCG GAGGCCCGTC TCACCCTCAC TCGTGCGAAC
TATCAGCGTG CCGAGCAGCT GGTCAAACAG GGGTCGGGCA CGGCGCGAGC CCGCGATGAA
GCGCTCAATG ATTTCAAATC GGCGGAAGCA GAAGTCGCGG CCGCCAAAAC GGCTCTCGAC
AAGGCGACGA TCACGGCGCC GTTTCCGGGC ATCATCGGTT TACGGCAGGT GAGCCTCGGG
CAGTATCTGA CCGCGGGAGA GCCTATTGCG ACGCTCGCCG ACGTGGACAA TCTGAGGATC
GACTTCAGCG TGTCCGAGGT GTTCCTCACG CATGTTCGCA AGGGGCAGGA CGTGCGGGTT
CTGTTCGATG CGCTGCCGGG CAACGCTTAT AGAGGTGTCA TCAGCGCCGT CGACCCTGTT
GTCAGCACCG AAGGTCGTGC ATTGAGCGCG CGTGCGGTGT TGCCCAATGA GGAGGGAGCT
CTGCGACCCG GTATCTTCGG CCGCGTCGAG ATCGTGACGG AAACAAGGAC CTCGATCGTA
CTGCCGGAGG CCGCAATCGT CGCGTCACCG ACCGGAGCAA AGGCAGTGTT CGTGGTCGTA
GACAGCCACG CGCAAATGAA AGAAGTCACC ATCGGTGAAA GGCTTCCGGG CAGTGTTGAA
ATCCTCTCCG GGCTGGAGGC TGGCGAGGTG GTTATCGTCG CCGGTCAGCT CAAGGTGAGA
GATGGAGCGC CCGTCGAACC GACGCCCGCG ACGGAGACGG GTGTTTCGCC CGCCGGCGAT
CCCGGCGCGG CCAATGCCCC CCGGGGCGAG TAA
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| Protein sequence | MGRHHRWNKA PRATFMQSLR ELPPRTLIIG ALAALVVLGF IYLVYARLSG QQGQQAFPPP
VVEVVEAPQQ PVQVKVSALG TLQADQAITI RPEINGIVTS IDFVDGQRMD TGDLVITIND
EDLKARLMQA EARLTLTRAN YQRAEQLVKQ GSGTARARDE ALNDFKSAEA EVAAAKTALD
KATITAPFPG IIGLRQVSLG QYLTAGEPIA TLADVDNLRI DFSVSEVFLT HVRKGQDVRV
LFDALPGNAY RGVISAVDPV VSTEGRALSA RAVLPNEEGA LRPGIFGRVE IVTETRTSIV
LPEAAIVASP TGAKAVFVVV DSHAQMKEVT IGERLPGSVE ILSGLEAGEV VIVAGQLKVR
DGAPVEPTPA TETGVSPAGD PGAANAPRGE
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