| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1995 |
|---|
| Symbol | |
|---|
| ID | 5455774 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 2178463 |
|---|
| End bp | 2180055 |
|---|
| Gene Length | 1593 bp |
|---|
| Protein Length | 530 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640877571 |
|---|
| Product | ferredoxin-dependent glutamate synthase |
|---|
| Protein accession | YP_001413266 |
|---|
| Protein GI | 154252442 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0069] Glutamate synthase domain 2 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00000483561 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 91 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCGATA GTTTCAGCAC CGCGCTTCGC AATCTCGCCG ACGCCTTCAA TCGTTCGGCG
ATCTGGCAGA TCGTGGACAT TCTCTCCGCA CTTTTCATTC TGAGCATCGG TTGTCTGCTG
CTGTCGGTCG TCGTCATCTT CATCATCGAC CGTACACAGA CGCAGCATGC AGTGCGGCGC
AATTATCCGG TCATCGGACG CTTCCGCTAT CTCTTCGAAA CGCTGGGCGA ATATTTTCGC
CAGTATTTCT TTGCGATGGA CCGCGAGGAA CTTCCTTTTA ACCGCGCGCA GCGCGCCTGG
GTCTATCGCG CTGCGAAGGG CGTCGACACG ACGGTTGCCT TCGGCTCGAC GCGCGACCTC
AGGCCGGCAG GCACAGTTAC CTTCGCCAAC TGCCCCTTTC CGACGCTCGA TCAGAATGCC
GCCGACACGG CCATTGTCGA AATCGGCCCC TATGCGCGCA CGCCCTACCG GACGGCATCG
CTCTACAATA TTTCAGGCAT GAGCTATGGC GCGATTTCAA AGCCCGCGGT GCTTGCCCTT
TCCAACGGCG CGCGTATGGC CGGCGTCTGG ATGAACACGG GCGAAGGCGG CCTCTCGCCC
TTCCATCTCG AAGGCGGCGC CGACATCGTC TTTCAGATCG GCACCGCAAA ATATGGCTGC
CGCGACGACG AGGGATTGCT CTCCGACGAA AAGCTGAAAG CCCTTGCGGC ACATGAACAA
ATCCGCATGT TCGAAATCAA GTTGAGCCAG GGCGCGAAAC CCGGCAAGGG CGGCATCCTT
CCCGGATCGA AAGTGACGCC GGAAATCGCC GCCATTCGGG GCATCGTCGT GGGACAGGAT
TCCATCAGTC CCAATCGCCA TCCGGAAGTG AACAGCATTC CTGAACTGCT CGACCTCGTC
TCCCATGTGC GCGACGTGAC AGGAAAGCCG ACCGGTTTCA AGCTGGTGCT TGGCGGCTAT
GAATGGCTGG ACGAACTATG CGACGAGATC AACAGCCGCG GCATCGAGAA CGCGCCTGAC
TTCATCACCC TCGACAGCGC CGATGGCGGC ACGGGCGCAG CACCCATGGC GCTGATCGAT
TATGTCGGTC TGCCGATCTG GGAAAGCCTG CCGATGCTGT GCGATGCGCT GGAACGCCAC
AAGCTGAAGA CGCGCATCCG CGTCAATGCG AGCGGCAAGC TCATCACGCC GGCCGAAGTC
GCATGGGCGC TCTGCGTCGG TGCGGATTTC GTGTGTTCGG CGCGCGGCTA CATGTTTTCG
CTGGGCTGCA TTCAGGCACT TCAATGCAAC AAGAATACCT GCCCGACCGG CATCACCACG
CATAACAAGA GCCTGCAGCG CGGGCTCGAC GTGACGGACA AGGCGGAGCG CGTGCGCCGC
TATGCCGAAC GCGTGACGCA TGAAGTCTGC GTGATTGCGC ATTCCTGCGG CGTCAACGAA
CCGCGCAAAC TGCGGCGCGA ACATGCGCGC ATCATGGGAT CGGATGGTGT GTCGGTATCG
CTTGCCGAAT ATTATCGCCG CTGGATACAG CCGGAAAGAC GCCCGTCGCA GAACGGCCTT
GGCCGCCCGC AATTCGACGC GGATGCCGCC TAG
|
|---|
| Protein sequence | MVDSFSTALR NLADAFNRSA IWQIVDILSA LFILSIGCLL LSVVVIFIID RTQTQHAVRR
NYPVIGRFRY LFETLGEYFR QYFFAMDREE LPFNRAQRAW VYRAAKGVDT TVAFGSTRDL
RPAGTVTFAN CPFPTLDQNA ADTAIVEIGP YARTPYRTAS LYNISGMSYG AISKPAVLAL
SNGARMAGVW MNTGEGGLSP FHLEGGADIV FQIGTAKYGC RDDEGLLSDE KLKALAAHEQ
IRMFEIKLSQ GAKPGKGGIL PGSKVTPEIA AIRGIVVGQD SISPNRHPEV NSIPELLDLV
SHVRDVTGKP TGFKLVLGGY EWLDELCDEI NSRGIENAPD FITLDSADGG TGAAPMALID
YVGLPIWESL PMLCDALERH KLKTRIRVNA SGKLITPAEV AWALCVGADF VCSARGYMFS
LGCIQALQCN KNTCPTGITT HNKSLQRGLD VTDKAERVRR YAERVTHEVC VIAHSCGVNE
PRKLRREHAR IMGSDGVSVS LAEYYRRWIQ PERRPSQNGL GRPQFDADAA
|
|---|
| |