| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1946 |
|---|
| Symbol | |
|---|
| ID | 5456853 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 2121492 |
|---|
| End bp | 2123390 |
|---|
| Gene Length | 1899 bp |
|---|
| Protein Length | 632 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640877523 |
|---|
| Product | acyltransferase 3 |
|---|
| Protein accession | YP_001413218 |
|---|
| Protein GI | 154252394 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1835] Predicted acyltransferases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 0.63132 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAACCTCG ACATGAAGTA TCGCCCAGAG ATCGACGGGT TGCGGGCTCT CGCCATCCTT
CCCGTCGTTC TGTTTCATGC AGGTTTTTCT CAGCTGTCGG GCGGCTATAC CGGTGTCGAC
GTCTTCTTCG TCATATCGGG ATATCTGATC ACGCGCATCA TCGTCGGCGA GGCGGAAGCG
GGAACATTTT CCATTCTGCA TTTCTATCGC CGAAGGATAT TGAGGATCGT TCCCGTCCTG
GCCGTGGTCC TGATCGTCAC CGCGATCATC GGCTACTACC TGTTTCTTCC CAACGAGTTC
GATGAACTCT CGAAAAGTCT CATCGCCGTC TCGCTGTTTT CGTCGAACAT TTTCTTCTGG
CAGTCTTCGG GATACTTCGA TGCGCCCAGC GCCTTGCGGC CTTTGCTGCA TACATGGTCG
CTGGCGGTCG AAGAACAGTT CTATCTTTTC TTTCCCTTTT TCATCATCGC CATCCATCGT
TTCGGCGGCC GGCGATATGG CGCGTGGATT TTCGCCGCCG TCGTCCTTTC CTTCGCCGCC
AGCGCCGTCG GCGTGGTGAC GTCACCCTCG GCTACTTTCT ATCTTCTGCC GACACGGGCA
TGGGAGTTGG GTGTCGGCGC ATTGATCGCC GTCGGATGGG TGCCGCGCGT GTCGTCGCAG
CGGCTCCGTC ACTTCCTTGC CGCCGCGGGA ATCATCGTCA TCGGCCTCGG GCTCTTCCTG
CTCGATGAAG AGAGTTATTT CCCCGGCTGG AATGCTCTCT ATCCCGTGCT CGGCACCGCT
CTTGTCATAG CTTACGGGCA GGGCACATTT ATCGGCGGCG TACTGAGCAC CCCGCCGGTC
AAATATGTCG GTCTGGTTTC CTATGCCTGG TATCTCTGGC ATTGGCCGGT GATCGTCTAT
TACACATTTG TGTTCGGGCC ATTGGCCGAT TGGTGGTCGA CTGCCTTTGT CATTGTCGTG
TCGTTCCTTC TCGCCGCCGT GTCGCGGCCG CTGGTGGAGC AGCCGTTCCG CTACGGGCTC
GGCTCTCTCC CGACAGGGCG GGTCGTCATG TCCGGCGCCG CCGCCTTGGC GGTGCTGGCT
TTCGCGGGCT GGTCGATGGC GGCCATGGGG CAGGTCGGGC GGACATTTCC GCCCGATGTG
CTCAAGGTGG CGCAATATTC CGCCTACAGG GATTTGCCCG CCTATGAGTA TCAGTTCCGG
CCCGGCGTCT GCATGTTGGG GCTGGTGCAT GAGGGCAGGC CGATCGACAA GAAAGAATGC
CTTACGCCCG ATCCGGCGAA GCCGGATTTT CTTGTTCTGG GCGACAGCCA TGCAGGCCAT
ATCTGGCGCG CACTCTCGCT CGAAATCGAC GAATGGCATT TCCTCCAGGC GACGGCATCC
GGCTGCATGC CGTTCGTGGG CGCAACAGGC GCGCTGCGCT GCACGAGCAC GATGCGGTAT
ATTTTCGAGG ATTTTCTGCA AGAGCAGGAT ATAGACGGCG TCATCATCGC CGCGCGCTGG
GAAGAAGATG AGCTCGATCA GCTTGACGAG ACGCTCGCCT TCCTCAAGCA GCATGTCGAA
CAGGTAATCG TTCTCGGGCC GGTCCCGGAA TATGAGAGTT CGGTTCCCCT GCTGCTCGCG
CGAAGCCTCT ATCACGACAG CCCGCGGATC GTTTCCTCGG CGGTCGACTG GTCGCGTGTG
GAGGTCGGCA AACAAGTCGC CGCCATAGCG GAGCGAAACG GCGTGACCTA CATATCGATG
ATCGACATCA TCTGTCCCGC CGGAAAATGC GTCTCCATGA TTGGAGGCAA GGTACCGGTG
GAGTTCGACT ACGGGCACCT CACTCTTGAA GGTGCCCGTT TCGCTGCGAA CAGGATTGAA
GCACAACTCG GCCTCGCTGA AGGCAAGCCG CGCCGGTGA
|
|---|
| Protein sequence | MNLDMKYRPE IDGLRALAIL PVVLFHAGFS QLSGGYTGVD VFFVISGYLI TRIIVGEAEA
GTFSILHFYR RRILRIVPVL AVVLIVTAII GYYLFLPNEF DELSKSLIAV SLFSSNIFFW
QSSGYFDAPS ALRPLLHTWS LAVEEQFYLF FPFFIIAIHR FGGRRYGAWI FAAVVLSFAA
SAVGVVTSPS ATFYLLPTRA WELGVGALIA VGWVPRVSSQ RLRHFLAAAG IIVIGLGLFL
LDEESYFPGW NALYPVLGTA LVIAYGQGTF IGGVLSTPPV KYVGLVSYAW YLWHWPVIVY
YTFVFGPLAD WWSTAFVIVV SFLLAAVSRP LVEQPFRYGL GSLPTGRVVM SGAAALAVLA
FAGWSMAAMG QVGRTFPPDV LKVAQYSAYR DLPAYEYQFR PGVCMLGLVH EGRPIDKKEC
LTPDPAKPDF LVLGDSHAGH IWRALSLEID EWHFLQATAS GCMPFVGATG ALRCTSTMRY
IFEDFLQEQD IDGVIIAARW EEDELDQLDE TLAFLKQHVE QVIVLGPVPE YESSVPLLLA
RSLYHDSPRI VSSAVDWSRV EVGKQVAAIA ERNGVTYISM IDIICPAGKC VSMIGGKVPV
EFDYGHLTLE GARFAANRIE AQLGLAEGKP RR
|
|---|
| |