| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1938 |
|---|
| Symbol | |
|---|
| ID | 5454753 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 2112189 |
|---|
| End bp | 2114183 |
|---|
| Gene Length | 1995 bp |
|---|
| Protein Length | 664 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640877515 |
|---|
| Product | Beta-galactosidase |
|---|
| Protein accession | YP_001413210 |
|---|
| Protein GI | 154252386 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1874] Beta-galactosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.949653 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 0.422519 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCAAG CTCAAAGCCT CACCGACGTC TCGATCGGCG TCTGCTATTA CCCGGAGCAC
TGGCCGGAAG CCATGTGGCC GGAGGATGCC CGGCGCATGC GTGAGGCGGG GATTTCCCGC
GTCCGCATCG GCGAGTTCGC CTGGTCCCGG CTGGAGCCGG AGCCGGGAAC TTACGATTTC
GACTGGCTAT CCCGCGCGCT CGATACGCTG CATGGCGAGG GCCTCCAGGT CGTTCTCGGG
ACGCCGACGG CAACGCCCCC CAAATGGCTG GTCGATTCGA TGCCCGACAT GTTGCCGGTA
GACCGGCATG GGCGGCCCCG CGGCTTTGCG TCGCGCCGCC ACTACTGCTT CTCCCATGCC
GGATACCGGC GCGAATGTGC GCGTATCGTG AAGGCGCTGG CTGAGACATT CGGGCAGCAT
CCGGCCATCG TCGCCTGGCA GACCGACAAT GAATATGGCT GCCACGACAC GGTGCTTTCC
TATTCCGACG AGGCGCGGCT CGGCTTTCGT CATTGGCTGC GCGATCGCTA CGGATCGGTC
GCCGCGCTCA ACGATGCCTG GGGCAATGTC TTCTGGAGCA TGGAATATCG CAGCTTCGAT
GAGATCGACC TGCCTTCCGG CACGGTCACG GAGGCGAACC CGGCACATCG CGCCGATTTT
CATCGCTATT CGTCGGATCA GGTCGCGGCG TTCAATCGCG TGCAGGTCGA AATCATCCGC
GCCCTTTCGC CCGGCCGCGA CATTCTCCAC AATTTCATGA CCTTCTTTCT CGACTTCGAT
CACTACGAGG TGATGAAGGA CCTCGATATT GCAACCTGGG ATTCCTATCC GCTGGGAAGT
CTCGACGTCT TTCCGGGCGA CGCCGCTCAC AAGACCGCCT TTATGCGCAC GGGCGATCCC
GATCTTCAGG CATTCCACCA CGATCTTTAT CGGGGTGCCG GCCGTGGCCG CTTCTGGGTC
ATGGAGCAGC AGCCCGGCCC GGTGAACTGG GCGCATTACA ACGTGGATGC GCAGCCCGGT
CTCGTCCGTC TCTGGGGGCT TGAGGGCTTC GCGCATGGTG CGGAGACGAT TTCTTACTTC
CGCTGGCGGC AGGCGCCTTT CGCGCAGGAG CAGTTTCATG CCGGGCTCAA CCTGCCGGAT
GGCGAACCGG ACCGCGCCTT CCATGAAGTG AAGCAGCTCT CGCAGGATCT CGCCTCGCTC
GGTCCGCTCG GTGCGTCCGC TTCCGCACGG GTGGCGCTCG TCTTTTCCTA TGAGGCGGCA
TGGTTCCTCC GCGTGCAGCC GCAAGGGCGC AGCTTCTCCT ATGTGGAGCA GGTCTTTGCG
ATGTACCGCT CGCTCCGCCG TCTCGGGCTC GATGTCGATG TCGTCGGGCC CGATGCCGAA
GTGAGCGGTT ACGCGCTTGT CCTCGTTCCT TCCATGCCGC ATGTGCCGGA GCGTCTCGCC
GCGTCGCTCG CGGCTTGCAA GGGAACGCTC CTCATTGCCG CACGCAGCGG CAGCCGCACA
GCGTCTCACC GGATACCGGA CAATCTCGCT CCCGGCATCC TCTCCGGCCT GCTCGGCGTA
AAGGTCACGC GCGCCGAGAG TTTCCGGCCC CACGGCGCCG TTCCCGTCCG CTACGACAAT
GAAAACTACA GCTTCGACCG CTGGCGCGAA TTCGTCGTTC CGGAGGCGGG CGTCGAGGTG
CTGGCGGAGA CGGAAGACGG GCATCCGGCC TTCACCCGCA AGGGCCGCGC GCATTACCTC
GCCGGCTGGC CGGACGACGC ATTCCTCAAC GGGGTAGTGG AGCGGCTGGC GCGGGAGGCG
GGCCTCGCAA CGGGCGAGCT TCCAGCCGGC TTGCGCAGCC GCCGGCGTGG GCCTTACCGC
TTCGTTTTCA ACTACGGCCC GGCCGCCGCC GACATCTCGC CTTATTTCCC CGCTAGTGAG
TTTGTGCTCG GCCAACCCCG GCTTGAAGTC GGCGGTGTGG CGGTTCTGCA TACGGACGTT
CCAGCGAACG GTTAA
|
|---|
| Protein sequence | MPQAQSLTDV SIGVCYYPEH WPEAMWPEDA RRMREAGISR VRIGEFAWSR LEPEPGTYDF
DWLSRALDTL HGEGLQVVLG TPTATPPKWL VDSMPDMLPV DRHGRPRGFA SRRHYCFSHA
GYRRECARIV KALAETFGQH PAIVAWQTDN EYGCHDTVLS YSDEARLGFR HWLRDRYGSV
AALNDAWGNV FWSMEYRSFD EIDLPSGTVT EANPAHRADF HRYSSDQVAA FNRVQVEIIR
ALSPGRDILH NFMTFFLDFD HYEVMKDLDI ATWDSYPLGS LDVFPGDAAH KTAFMRTGDP
DLQAFHHDLY RGAGRGRFWV MEQQPGPVNW AHYNVDAQPG LVRLWGLEGF AHGAETISYF
RWRQAPFAQE QFHAGLNLPD GEPDRAFHEV KQLSQDLASL GPLGASASAR VALVFSYEAA
WFLRVQPQGR SFSYVEQVFA MYRSLRRLGL DVDVVGPDAE VSGYALVLVP SMPHVPERLA
ASLAACKGTL LIAARSGSRT ASHRIPDNLA PGILSGLLGV KVTRAESFRP HGAVPVRYDN
ENYSFDRWRE FVVPEAGVEV LAETEDGHPA FTRKGRAHYL AGWPDDAFLN GVVERLAREA
GLATGELPAG LRSRRRGPYR FVFNYGPAAA DISPYFPASE FVLGQPRLEV GGVAVLHTDV
PANG
|
|---|
| |