Gene Plav_1900 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_1900 
Symbol 
ID5454456 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp2065070 
End bp2066038 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content62% 
IMG OID640877477 
Productputative ribonuclease BN 
Protein accessionYP_001413172 
Protein GI154252348 
COG category[S] Function unknown 
COG ID[COG1295] Predicted membrane protein 
TIGRFAM ID[TIGR00765] YihY family protein (not ribonuclease BN) 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.213292 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value0.534085 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGGAAG AAGAACGGCA AAGACAAAGC GGCCGCGGCC GTAGCGCAGA GCAACCCTCC 
GACATCCCGG CGAAGGGCTG GCGCGATGTC GCTCTTCGTG TCTGGGCGAA AATCAACGAG
GACAGCGTGA TGCTGGTGGC GGCGGGCGTC AGCTTCTACA TTCTGCTCGC ACTCTTCCCC
GCCCTCGCCG CTTTCGTTTC GATCTATGGC TTCGTCGCCG ACCCCAAAAC CATCGCCGAC
CACATCGCCT TTCTCGGCGG CTTCCTGCCC ACTGACGGGC TAGAGCTCAT CCGTGCGCAA
CTCGACGGGT TGCTCCGGCA AAAGCCGAAC TCGCTCGGAC TGGGCTTCCT GCTCGGGCTC
GGCGTTGCAC TCTGGAGCGC GAACAACAGC GTGAAGGCGC TCTTCGAGGC GATGAATGTC
GCCTATGAGG AGGAGGAGAA GCGCTCCTTC GTGAAGCGGC ATCTCGTCTC GTTTTCGTTC
ACGCTGGGCG CGATCGCCAT CGGCGTTCTC TTTCTGCTGA CGGTTGGTAT CGTTCCGGCG
GCACTCGCCG TTCTGCGCAT CGAGAGCTGG GCCGAAACGC TGATCCGCCT CGGCCGCTGG
CCGGTGATGC TGATTGCGGT CGGCATCGCC ATCTCGCTGA TCTATCGCTA CGGACCGAGC
CGCGAGCACG CGAAACTTCG CTGGCTAAGC TGGGGCGCGG CGCTGGCAAC ATTGGTCTGG
ATCGCGGCCT CTGTCGGCTT CTCCTACTAT CTTGAAAACT TCGCCAACTA CAACGCTACC
TATGGCGCGC TCGGCGCCGT CATCGGCCTG ATGATGTGGA CCTGGATTTC GGTGATGATC
ATCCTGATCG GCGCCGAGAT AAACGCCGAG ATGGAACACC AGACAGCGCG GGATTCGACG
ACCGGCGATC CGAAACCGAT GGGAGAGCGC GGCGCGACCG TCGCCGATAC GCTGGGCGAA
GTGCCGTAA
 
Protein sequence
MTEEERQRQS GRGRSAEQPS DIPAKGWRDV ALRVWAKINE DSVMLVAAGV SFYILLALFP 
ALAAFVSIYG FVADPKTIAD HIAFLGGFLP TDGLELIRAQ LDGLLRQKPN SLGLGFLLGL
GVALWSANNS VKALFEAMNV AYEEEEKRSF VKRHLVSFSF TLGAIAIGVL FLLTVGIVPA
ALAVLRIESW AETLIRLGRW PVMLIAVGIA ISLIYRYGPS REHAKLRWLS WGAALATLVW
IAASVGFSYY LENFANYNAT YGALGAVIGL MMWTWISVMI ILIGAEINAE MEHQTARDST
TGDPKPMGER GATVADTLGE VP