| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1871 |
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| Symbol | |
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| ID | 5454147 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 2031275 |
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| End bp | 2033440 |
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| Gene Length | 2166 bp |
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| Protein Length | 721 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640877449 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001413144 |
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| Protein GI | 154252320 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 0.616361 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGCGCG ATCCGCGCGC ATGGGCGCGC GCCTGTGCAA CCGCGCTCCA ATTGCGCTTC
AAGAGCCATT TCGTTTCGGT GCGCGCCAAG GTGGTGAGCC TGCTGACGCT TGTCGGCGGC
GTGCTCATCG CGGTGAGCGG GGCTCTCACG GTCTACGACT TCAATGAGGC GCTGCGCGCG
CAGATGGAAA TGCGCGCGGT GGGCGCGGTG GATGTGCTGA CGCTGGCGGC GCGGCGGGCG
GGCAGCCTCG AGGAGATGGA GCCGGTGCTG TCGGCCATTA CCGGCGCGGT CACGATCCGC
GATGCGGCGG TGGCGGGCGA AGACGGGCGC GTGGCGGTGT CGTCGCATTC GGGATGGCTC
GGCCAGGGGC TGCGCGGCGC GGCGGTGAAG GAAGCGGCTA TCGGCCGCGC CGTTCCGGCG
GGGACGCTCC GATATCTCCC CGGATATGGA AAACATGGAG GCGACTTCAT CATCGGCATC
GAGCTGCCGC GGCTCGGCAA GAGCGCGCTG GCGGTGGTGC GTGTCGATGC GGACCTGCTG
GCGGAGCGGA TTTCGGCGCA GGCCTGGACC AGGATGATGT GGCTCACCAT TTCGGTGATC
CTCGCGGTGC TGACGGTTTC GATGCTGATC CACCGCGTGG TGGTGGCGCC GATCGAGGCG
CTGCGGCGCT ATGCGGAAGC GGGCGGCGGC GCGGAAGCGG ATGTCGCCGG ACCCGATGAC
GAAATCGGGA TCGTGGCGCG GGCGCTGTCG GATTCGTTCC AGGCGAAGCG GGACGGGGAA
GACCGGCTGG AGCGGCTTGC GGCGACGGAC GGGCTGACCG AACTCGGCAA CCGCAGCTTC
TTCAAGTCGC GCCTCGGCGA TGAAATCTCG CGGGCGGAGC GGCATGGAGG CGTCGTCGGC
GTGATGATCC TCAATCTCGA CAATTTCAAG GACATCAACG ATACGCTGGG CCATGACGCG
GGCGACCAGG TGCTGCGGCG CACGGCGGAT ATTCTCAAGG GATGCCGGCG CGGCGAAGAC
GTGGTGGCGC GCATCGGCGG CGACGAATTC GGCGTCATCG TGACGGATAT CAAGAATGCG
GATGATGTGC TGCAGCTGGC GAGCCGGCTG GTGCGGGCGG TGAGCGCACC GTTCCGGCTG
GGCACACAGG AGCTGACGCA GGGCGCCTGT GTGGGCCTTA CGCTCTATCC GCAGGACGGG
CGCGACGCCG ATGTGCTGGT GAAGAATGCC GACCTTGCGC TGTCGCGCGC GAAGCATGAA
GGCTCGGGCG CCTGCGTGCT ATACCGCCAC GAACTGCATT TGCGCGCGAT CGAACGCAAC
ACGATTGAAC GCGACCTGCG CGTGGCGATG GCGCGGAATG AACTGAAACT TTTCTACCAG
CCGAAGATCG ACATGGCGAC CGGCCGCGTG ACCGGCGCGG AGGCGCTGAT CCGCTGGCGG
CACGAGGAGC GCGGCTTCAT CTCGCCGGCG CAGTTCATTC CCGTGGCCGA GCGGACGGGG
CTTATCGTGC CGCTGACGAA ATGGGTGCTG GACGAGGCCT GCCGCCAGAA CCGCGAATGG
CAGGAGCTCG GGTTGCCGAA GATCGGCGTT GCGGTGAACG TATCGGCGGT GGACCTGAAG
CGGACCGACC TCACCGACAC GATCGCGAGC ACGCTGATCC GAAGGGGCCT GTCGCCGCAA
TATCTCGAAC TCGAAGTCAC CGAGAGCATG GTGATGCAGG ATGTGGACGT GGTGATCGGC
ACGCTTCGGC GGCTGCGCGG CCTCGGCCTC GGCATCGGCA TCGACGATTT CGGGACGGGT
TATTCATCGC TCGCCTATCT GAAACGCTTC CCCGTGAAGC GGCTGAAGAT CGACCGCACC
TTCGTCAGCG ATATTGCCGA CGGGCGGGAC GGGCATGTGA TCCCGAAGGT CATCATCGAC
CTTGCGCATG CGCTTGGCGT GATGGTGGTG GCGGAGGGCG TGGAAAGCGC CGACCAGTAC
GACATGCTGC GCGATCTTGG CTGTGACGAG GTGCAGGGCT ATTTCGCCGG GCGGCCGATG
CCGGCGGCGG AGTTCGAAGT GTTTCTGCGC AATTCGCCGG CGGGACGGGG CATCGCGCAG
ATCGAGGCTT CCGCGGAGAC GGCCGACAGG ACGGCGGACG ACGCCTCGCG CGGTTCGGCC
GCCTGA
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| Protein sequence | MRRDPRAWAR ACATALQLRF KSHFVSVRAK VVSLLTLVGG VLIAVSGALT VYDFNEALRA
QMEMRAVGAV DVLTLAARRA GSLEEMEPVL SAITGAVTIR DAAVAGEDGR VAVSSHSGWL
GQGLRGAAVK EAAIGRAVPA GTLRYLPGYG KHGGDFIIGI ELPRLGKSAL AVVRVDADLL
AERISAQAWT RMMWLTISVI LAVLTVSMLI HRVVVAPIEA LRRYAEAGGG AEADVAGPDD
EIGIVARALS DSFQAKRDGE DRLERLAATD GLTELGNRSF FKSRLGDEIS RAERHGGVVG
VMILNLDNFK DINDTLGHDA GDQVLRRTAD ILKGCRRGED VVARIGGDEF GVIVTDIKNA
DDVLQLASRL VRAVSAPFRL GTQELTQGAC VGLTLYPQDG RDADVLVKNA DLALSRAKHE
GSGACVLYRH ELHLRAIERN TIERDLRVAM ARNELKLFYQ PKIDMATGRV TGAEALIRWR
HEERGFISPA QFIPVAERTG LIVPLTKWVL DEACRQNREW QELGLPKIGV AVNVSAVDLK
RTDLTDTIAS TLIRRGLSPQ YLELEVTESM VMQDVDVVIG TLRRLRGLGL GIGIDDFGTG
YSSLAYLKRF PVKRLKIDRT FVSDIADGRD GHVIPKVIID LAHALGVMVV AEGVESADQY
DMLRDLGCDE VQGYFAGRPM PAAEFEVFLR NSPAGRGIAQ IEASAETADR TADDASRGSA
A
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