| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1856 |
|---|
| Symbol | |
|---|
| ID | 5455472 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 2014109 |
|---|
| End bp | 2014840 |
|---|
| Gene Length | 732 bp |
|---|
| Protein Length | 243 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640877435 |
|---|
| Product | monofunctional biosynthetic peptidoglycan transglycosylase |
|---|
| Protein accession | YP_001413130 |
|---|
| Protein GI | 154252306 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
|---|
| TIGRFAM ID | [TIGR02070] monofunctional biosynthetic peptidoglycan transglycosylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.0266804 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 0.314056 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTCA AACCAGAAGG CCCGAGCGGC GATCGCCTGG AAACGGGGGA TGAGAAGGAG
GCCGGACGCG GCCCCTGGAA GCGGGCTGGG CTGTGGGCGG CGCGGGCGCT GCTGCTGCTG
TTTTTCGGGC CGGCCTTAGT TCTTTTGGTC TATATGATTG TCCCGCCGCC GGTGACGCCG
CTGATGCTGA TAAGGGCGGT GGAAGGACAC GGAATTTCCA AGTCGTGGCA GCCACTTAGC
GAGATTTCCC CGAACCTTCA GCGGGCCGTG ATTGCGGCTG AAGATAGTAA ATTCTGTCAG
CATGGAGGCT TCGACTGGGA GGCCGTCGAT ACCGCCATCG AAAGGCTGCG TGGCGGTGGG
CGCGTGGTGG GGGCCAGCAC CATCAGCATG CAGACCTCGA AGAACCTGTT TCTGTGGCCG
GGGCGGACTT TTCTGAGGAA AGGCGGCGAG GCCTATATCA CCGTGTGGCT GGAAACGCTG
CTTTCCAAGA AGCGGATCCT GGAGCTTTAC CTCAATGTGA TCGAGTTCGG GCCCGGCATA
TATGGGGCGG AAGCGGCGGC GCGGCACTAT TACGGCGTCA GTGCGGGACA ACTCAGCCAT
GCGCAGGCGG CACAACTGGC GGCGGTGCTG CCGAGCCCGC TGACGCGGCG GCCGTCGAAC
ACCGGCTATG CGGGCACGAT TTCGGCGCGG ATGAACTCGG TTCAGCTCGG CAAGCACGGT
CCGTGCGACT GA
|
|---|
| Protein sequence | MDFKPEGPSG DRLETGDEKE AGRGPWKRAG LWAARALLLL FFGPALVLLV YMIVPPPVTP
LMLIRAVEGH GISKSWQPLS EISPNLQRAV IAAEDSKFCQ HGGFDWEAVD TAIERLRGGG
RVVGASTISM QTSKNLFLWP GRTFLRKGGE AYITVWLETL LSKKRILELY LNVIEFGPGI
YGAEAAARHY YGVSAGQLSH AQAAQLAAVL PSPLTRRPSN TGYAGTISAR MNSVQLGKHG
PCD
|
|---|
| |