| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1838 |
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| Symbol | |
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| ID | 5455305 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 1988312 |
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| End bp | 1990738 |
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| Gene Length | 2427 bp |
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| Protein Length | 808 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640877417 |
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| Product | conjugal transfer ATPase TrbE |
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| Protein accession | YP_001413112 |
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| Protein GI | 154252288 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAACC TAACCGAGTA CCGCCGCAAG CCGGACCGCC TCGCCGATCA CTTGCCCTGG
GCGGCACTCG TGGCGCCGGG CGTTGTCCTC AACAAGGATG GTGCGTTTCA GCGGACGTTG
AGGTTTCGGG GCCCGGACCT CGAAAGCGCG ACGGAGGCCG AACTGATCGG CGTTTCGGCC
CGCTTCAACA ATGTCGCGCG CCGCTTCGGC TCGGGCTGGG CGCTCTTTTT CGAGGCAGAG
CGTTTCGCGG CGGCGGATTA TCCCGACAGC GTCTTTCCCG ACGCCGCTTC CTGGCTGGTC
GATCGCGAGC GCCGCGCGGG CTTCGAGGGG GCGGGACATT TCGAGAGCGC CTGCCACCTC
ACCCTTTATT ATATGCCGCC GGCGGATACG GTTTCGCGGG CCGAGCGGTG GCTCATCGAG
AAGGAGAGGG CGGAGAGCGC CCGCGACTGG CGGGAGGATC TCGACGGCTT CATTGCCGAG
ACCGACCGGA TCGCCGATCT CCTCAAGGGT TTCATGCCGG AGCTCCGTCC GCTCGACGAT
GCGGAGACGC TCACCTATCT CCACCGCGCC GTCTCCTCGA AGCGACACCT TATCGTGCCG
CCCGAGACGC CGGTCTATCT CGACGCGGTG CTGGCCGACG AGGCCTTGAG TGGCGGCCTC
GAGCCGATGC TGGGCGCGCG GCATCTGCGG ACGCTGACGG TGCTCGGCTT CTCGAACCTG
ACAAGGCCCG GGCTGCTCGA TGCGCTCAAT CATCTGGCGC TCCCCTATCG CTGGATGACG
CGCTTCATCG CGCTCGACAA GACCCTTGCA ACGCGGGAAC TCACCAAACT CCGCCGCCAA
TGGTTCGCGA AGCGGAAGTC GGTGACCGCG CTCCTGCGCG AGGTCATCTA TAACGAACCG
GCGCCGCTTC TCGACACGGA TGCCGACAAC AAGGTGGTCG ATGCCGATCT CGCCCTGCAG
GCGCTGGGTG GCGATCATGT GAGCTTCGGC TATCTGACGA CGACGATCAC CGTCGCCGAC
GAGGATGCCG AAGTCGCGGA CGAGCATCGC CGTGCTGTCG AGCGCGCGGT CACCGGCGCC
GGCTTCACCG TGATCCGCGA AAGCGTCAAC GCGGTCGAAG CCTGGCTTGG CAGTCTGCCG
GGTCACGTCT ATGCCAATGT CCGGCAGCCG ATCGTCCATA CGCTCAATCT CGCCCATCTG
ATGCCCTTGT CGTCGGTCTG GGCCGGACCG GCGCGGAACG CGCATTTGGA CGGTCCGGTC
CTGCTCCATG CCGAAAGCGA AGGCGCAACG CCCTTCCGGT TTTCGACCCA TATCGGCGAT
GTCGGCCATA TGCTGATCGT CGGTCCGACC GGCGCCGGCA AGTCGGTGTT GCTGGCGCTG
ATGGCGATGC AGTTCCGGCG CTACGAAGGC GCGCAACTCT ATCTCTTTGA CAAGGGTTTC
TCGGCGCGTG CCGCCATTCT CGCCATGGGC GGCGCCCATC ATGCGCTGGG CTCGGGCGAG
GGCGAGACCG CGCTCGCCTT CCAGCCGCTT GCCCGAATCG ACGAAGCGGC GGAATGCGGC
TGGGCGGCGG AATGGATCGG ATCGCTTCTC ACGCATGAGA AACTCGAGGT GACGCCGGAG
GTGAAGGATG CCGTCTGGTC GGCGTTGAGG AGCCTCGCCT CCGCGCCGTG CGGTGAGCGG
ACGCTGACCG GCCTCTCCGT CCTGCTGCAA TCGAACGCGC TCAAGGCAGC GCTCACGCCT
TACACGCTGG AAGGTCCGTT CGGGCATTTG CTCGATGCGG CAGAAGACGG GCTCGCGCTT
TCCGGCATCC AGTGTTTCGA GATGGAAGCA CTGCTGCACG AGAAGGGCGC GGTGATGCCG
GTTCTCACCT ATCTCTTCCA TCGCCTTGAG GAACGCTTCA CCGGCGCGCC GACGCTTCTC
ATTCTCGATG AGGCCTGGGT CTATCTCGAC GACCCGCTTT TCGCCTCCCG CATCCGTGAA
TGGTTGAAGA CGCTTCGCAA GAAGAATGTC GCGGTCATCT TCGCGACGCA GTCGCTTGCC
GATATCGCTG AGAGCGCCAT CGCGCCCGCT ATCATCGAGA GCTGTCCGCA GCGGATATTC
CTCCCCAATG ACCGCGCAAT CGAACCGCAG GCGCGGGCGG CTTACGAGCG CTTCGGTCTC
AACACGCGCC AGATCGAGCT GATCGCGGAA GCCATGCCGA AGCGGCACTA CTATCTCCAA
TCCCGCCGCG GCAACCGGCT TTTCGAACTC GGGCTCGGTC CCGTGGCGTT CACCTTTTGC
GGCGCGTCTT CTTCCGCCGA CCGGAAACTC ATCGGTCGTG TGTTGAATGA GACGGGGTCA
GCGGGTTTCG CGAAGAGATT TCTCGCCGCG AAGGGCCTCG ATTGGGCCGC CGATCTCATC
GACATCCATA CAGCGAAAAC TTCTTAA
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| Protein sequence | MLNLTEYRRK PDRLADHLPW AALVAPGVVL NKDGAFQRTL RFRGPDLESA TEAELIGVSA
RFNNVARRFG SGWALFFEAE RFAAADYPDS VFPDAASWLV DRERRAGFEG AGHFESACHL
TLYYMPPADT VSRAERWLIE KERAESARDW REDLDGFIAE TDRIADLLKG FMPELRPLDD
AETLTYLHRA VSSKRHLIVP PETPVYLDAV LADEALSGGL EPMLGARHLR TLTVLGFSNL
TRPGLLDALN HLALPYRWMT RFIALDKTLA TRELTKLRRQ WFAKRKSVTA LLREVIYNEP
APLLDTDADN KVVDADLALQ ALGGDHVSFG YLTTTITVAD EDAEVADEHR RAVERAVTGA
GFTVIRESVN AVEAWLGSLP GHVYANVRQP IVHTLNLAHL MPLSSVWAGP ARNAHLDGPV
LLHAESEGAT PFRFSTHIGD VGHMLIVGPT GAGKSVLLAL MAMQFRRYEG AQLYLFDKGF
SARAAILAMG GAHHALGSGE GETALAFQPL ARIDEAAECG WAAEWIGSLL THEKLEVTPE
VKDAVWSALR SLASAPCGER TLTGLSVLLQ SNALKAALTP YTLEGPFGHL LDAAEDGLAL
SGIQCFEMEA LLHEKGAVMP VLTYLFHRLE ERFTGAPTLL ILDEAWVYLD DPLFASRIRE
WLKTLRKKNV AVIFATQSLA DIAESAIAPA IIESCPQRIF LPNDRAIEPQ ARAAYERFGL
NTRQIELIAE AMPKRHYYLQ SRRGNRLFEL GLGPVAFTFC GASSSADRKL IGRVLNETGS
AGFAKRFLAA KGLDWAADLI DIHTAKTS
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