| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1821 |
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| Symbol | |
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| ID | 5456708 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 1973557 |
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| End bp | 1975542 |
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| Gene Length | 1986 bp |
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| Protein Length | 661 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640877400 |
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| Product | hypothetical protein |
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| Protein accession | YP_001413095 |
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| Protein GI | 154252271 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3843] Type IV secretory pathway, VirD2 components (relaxase) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 59 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGGACG ACGGCTTCGA GCCACGTCTC GGCAGGATCG GGGCGCGCGC CGGAAAGGCC
GAGCGGCGCT ACCAGCAACG CGTGCTGAAA TCGGCGGCGC TGGCGGGCGG ACGCCGCTTC
GGTGGAGCGT CGCCGGGCTC GGGCTTTCAC GGCAATCGCA TCGGCCGCGG CGCCGGCATC
GGTCGCGTGC TCGCGTCGCG CGGAACCCAT GCCGCCTTCC GCGCGCGGCG CGTGGTCGTC
AAATCCCGCA TCGTGAAGCT GAAGGGGCAG GGCCTGAAGG CGGCCCGTCT CCATCTCCGC
TATATCCAGC GCGACGGCGT GACGCGCGAA GGGCAGCCGG GCGAGCTTTA CGATGCCGAA
CACGACCGGG CGGACGGCAA GGCGTTTCTG AAACGCTGCG ACGGCGACCG GCACCAGTTC
CGCTTTATCG TTTCGGCCGA GGACGCCGCG CAATATGAGG AACTGAAGGG TTTCACGCGG
CGCTTCATGG CCCGCATGGA GGAGGATCTG GGAACGCGTC TCGATTGGGT CGCGGTCGAT
CATTACAACA CCGGCCATCC CCATACCCAC ATCATGCTCC GGGGCAAGGA CGAGCGCGGA
CAGGACCTGG TCATCGCGCG GGATTATCTT TCGACGGGCA TGCGCGAGCG CGCCGCCGAA
ATCGTCACCC TCGATCTCGG TCCCCGCAGC GATCTCGAGA TCGAGGCGAA CCTCGCGCGG
GAGGTCGAAC AGGAACGGTT CACGGGTCTC GACCGCGGCC TGTTGAAGGA CGCGGACGGC
GAAGGCTGTG TTCGGTCTGG GGCGACCGTC GGCGACGCCT TCCGGCAAAG CCTGCGGGCC
GGGCGATTGC AGAAACTGAA ACGGTTGGGA CTGGCGGAGG AGATCGCCAC CGGAACGTGG
AAGCTTGCCG GGGACCTGGA ACCGGCGCTC CGCCGCATGG GGGAGCGCGG CGACATCATC
AAGACGCTTC ACCGCGAAAT GACGGAGAAG GGGCTCGCGC GGGTCCCCTC CGACTATGCG
GTTCATGAAA CCGCGAACGG GCAGGAGCGA CGCGTCGTCG GGCGTCTTGT CACCAGAGGG
CTGTCGAATG AACTCAACGA CCGTCACTAT TTGATCGTCG ACGGGATCGA CGGTCGTGTG
CATTACGTCG ATATCGGTGG GGCGGAGACG GTGGACGCGC TGCCGGACGG CGCCATCGTC
GCGATCAGGC CGAAGCCGGT GGGACAGAGA ACCGTCGACC GAACGATTGC GGAGGTCGCG
GCGGCGAATA ACGGGCGCTA CGACATCGAG GCGCATCTCC GCCACGACCC AACCGCGTCA
CGCGCCTTCG CCGAAACCCA TATCCGGCGG CTGGAAGCGA TGCGGAGGAT TGCCGGGCTG
GTCGAGCGAG AGCCGGACGG AAGCTGGGTC ATCGCGCCGG ATCACTTGGA ACGCGCCGCA
TCCTTCGAGC GCGGTCAGGC AAGATCGAGC CCGGTCATTG TCGAGACGCT TTCCGCCTGG
CCGCTCGAGC GGCAGGTGAC CGCCAATGGC GCGACCTGGC TTGACCGTGA GCTTGTGGCG
GAAAAGCCGG AGCCCTTGCG CGAGGCGGGC TTCGGCGGGG AGGTGCGCGA CGCGCTCGCG
ATGCGTCGGC GATGGCTGGC CGGGCAGGAA CTGGCACGCG AGGAACAGGA CCGGATCGTC
TATCGCGCCA ACATGCTCGG CATCCTGCGC CGGCGCGAGC TGCTGCGTGT AGCGGAACAG
CTCTCGGGCG AGCTCGGTCT ACCCTATGCC GAGGCAGAAT TGGGGCAAAA GGCGACTGGC
ACCTATCGCC GGCATGTCGA TCTCGCCAGC GGGCGTTTCG CGGTGATCGA AAGATCGCGC
GAGTTCACGC TCGTACCCTG GCGGCCGGTG CTGGAGCGGC ATCTCGGGAG GCAGGTCGCA
GGGGTCGTCC GGGAAGGGAG GGTCTCGTGG ACGATCGGGA GGCGGAGAGG GCCGGGGGTT
TCATAG
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| Protein sequence | MQDDGFEPRL GRIGARAGKA ERRYQQRVLK SAALAGGRRF GGASPGSGFH GNRIGRGAGI
GRVLASRGTH AAFRARRVVV KSRIVKLKGQ GLKAARLHLR YIQRDGVTRE GQPGELYDAE
HDRADGKAFL KRCDGDRHQF RFIVSAEDAA QYEELKGFTR RFMARMEEDL GTRLDWVAVD
HYNTGHPHTH IMLRGKDERG QDLVIARDYL STGMRERAAE IVTLDLGPRS DLEIEANLAR
EVEQERFTGL DRGLLKDADG EGCVRSGATV GDAFRQSLRA GRLQKLKRLG LAEEIATGTW
KLAGDLEPAL RRMGERGDII KTLHREMTEK GLARVPSDYA VHETANGQER RVVGRLVTRG
LSNELNDRHY LIVDGIDGRV HYVDIGGAET VDALPDGAIV AIRPKPVGQR TVDRTIAEVA
AANNGRYDIE AHLRHDPTAS RAFAETHIRR LEAMRRIAGL VEREPDGSWV IAPDHLERAA
SFERGQARSS PVIVETLSAW PLERQVTANG ATWLDRELVA EKPEPLREAG FGGEVRDALA
MRRRWLAGQE LAREEQDRIV YRANMLGILR RRELLRVAEQ LSGELGLPYA EAELGQKATG
TYRRHVDLAS GRFAVIERSR EFTLVPWRPV LERHLGRQVA GVVREGRVSW TIGRRRGPGV
S
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