| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1806 |
|---|
| Symbol | |
|---|
| ID | 5455686 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 1961925 |
|---|
| End bp | 1963010 |
|---|
| Gene Length | 1086 bp |
|---|
| Protein Length | 361 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640877386 |
|---|
| Product | acyl-CoA dehydrogenase domain-containing protein |
|---|
| Protein accession | YP_001413081 |
|---|
| Protein GI | 154252257 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.133917 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 57 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTTG CATTGTCGGA AGAGCAGCGC ATGTTGCAGG ATAGCGTCCG CCGTTTTCTT
GAACAGAATG CGCCGCTTGA CAAGGTACGC CTTGCCGCCG GGAACACGCA TACCGTTCAG
CGGTCCCTGT GGGCGGGCGC CAGCGAGCTG GGTATCCCTG GAATGCTGAT TCCGGAAGAT
TTTGGCGGCA TGGGTCTTGG GTTTCTCGAC GCGGCGATCG TTTACGAGAT GTTCGGTCGG
CATGTGGCGC CGCTGCCTTT CCTTGGGGCC GCCGTCATGG CGCCGCTCGC GCTGATGCTT
GCAGGCAGCG AGGCCCAGCA GGAAAAGTGG CTTCCAAAAA TCGCCGCGGG CGAGATTGTC
GCAGGCGTGG CCGTCACGGA AAGAATCGGC ATCCGCGAAG GTGCCGGCGT GAAAGCCCGG
AAGGGAACGC TCACGGGCAA GTCCCTCTTC GTGATCGACT GGGCTGAGGC CGATCTCTAC
ATCGTGGCCG ACAGCGACCA TGGACTTCAT CTCGTTTTGC CCGACGCGAA GGGTTTGTCG
CGGCGGGCGC TCAACACCAT CGACAAGACC CGATCGGTTG GCGAACTTGT CTTCGATCGG
GTCGCGGCTG AGCCCTTGCG CCTATCCAGC GCCGACGCGG TTGCGCGGGT GATAGATGCC
GGTAGGGTCA TGCTTGCCGC CGACACCCTC GGCGCGGGTC AGATGATGAT CGAGAAGGCG
GTAGCTTATG CGGGAGAGCG CAAGCAGTTC GGCCGTGTGA TCGGGTCGTT TCAGGCCGTG
AAACACCTCT GCGCCGAGAT GGCGGCCGCT CTCGAACCAT CGCGTTCGCT GGTGTGGTAT
GCGGCCCATG CGCTGGACGA GGTGCCGGGC GACGCGCGCC TCATGGCATG TCATGCCAAG
AGCCATTTGT CGGAAGTGGG CCGCTTCGTC GCGCGCACCG CGACCGAGGT TCATGGCGGC
ATGGGCTTCA CCGATCTGCT TGGCCTGCAT TACTGGTTCA AGCGTATTGG TTTCGATCGG
CAGCTGTTGG GCGGGCCGGA GCTGGTTCGT CTTGAAGCGG CGCGCTTGCA GGGCTGGGCT
GCCTAG
|
|---|
| Protein sequence | MEFALSEEQR MLQDSVRRFL EQNAPLDKVR LAAGNTHTVQ RSLWAGASEL GIPGMLIPED
FGGMGLGFLD AAIVYEMFGR HVAPLPFLGA AVMAPLALML AGSEAQQEKW LPKIAAGEIV
AGVAVTERIG IREGAGVKAR KGTLTGKSLF VIDWAEADLY IVADSDHGLH LVLPDAKGLS
RRALNTIDKT RSVGELVFDR VAAEPLRLSS ADAVARVIDA GRVMLAADTL GAGQMMIEKA
VAYAGERKQF GRVIGSFQAV KHLCAEMAAA LEPSRSLVWY AAHALDEVPG DARLMACHAK
SHLSEVGRFV ARTATEVHGG MGFTDLLGLH YWFKRIGFDR QLLGGPELVR LEAARLQGWA
A
|
|---|
| |