| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1800 |
|---|
| Symbol | |
|---|
| ID | 5456937 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 1956282 |
|---|
| End bp | 1957130 |
|---|
| Gene Length | 849 bp |
|---|
| Protein Length | 282 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640877380 |
|---|
| Product | 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoAhydratase |
|---|
| Protein accession | YP_001413075 |
|---|
| Protein GI | 154252251 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2030] Acyl dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 0.351849 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGAA AAAAGGCGAT TTCGAAGGAT TTGGTCGGCA TGACGTTTCC GGCCGTCGAT
GTGGAATGGT CCGACAAGGA CACGATGCTC TATGCACTCG GCGTCGGCGC TCGTCCCGCC
GACGGGCTTG ATTTCATTTA CGAAGGCCGG GGACCGAAAG TTTTGCCGAC TTACGCCGTC
ATCCCTGGCG GGCGAGGGCT CGCCGGGCTG ATGAGCGGCG TCGAGATGAA GCTGGAAATG
CTGCTGCATG GCGAGCAATC CGTCGAGTTG CTGCGTCCCC TGCCCTCATC GGCCAAGATC
AAGGTAACGG GACGCGTTTC CGAGGTTTGG GACAAAGGCA AGGCGGCCGT TATCGGGGTT
GAGAGCACAG GTTCCGACGA GAAGGGGCCC CTCTTCAAAA CTCACGCAAC ACTATTTGTG
CGCGGCGCCG GCGGATTCGG CGGAGAGCGC GGCCCTTCGG GCGTCGACTC GACGCCGCCG
GATCGGACGC CTGACGCCGT GGTCGAGGAT GTGACGCGCC CCGAGCAAGG GGCAATCTAC
CGCCTCTCGG GCGACCGCAA TCCGATCCAC ATTGATCCGG ACTTCGCCAA ACTGGGCGGC
TTTGAAAAGC CCTTCGTTCA CGGGCTTTGC ACATATGGCT TTGTCGGCCG CGCGGTCCTG
CGCGAGCTTT GCGGCAACGA TCCTGCCCGC TTCAAATCTC TCAGCGGACG CTTTGCCGCT
CAGGTCTATT TCGGCGACAC CATTATAACG AAGATGTGGA AAACGGGCGA CGGAGTCGCA
ATCGTGCAGG CCGAGACGCA AAACGGTAAT GTCGTGCTGT CTCAGGCCAA AGCGGCATTC
AAGCCCTGA
|
|---|
| Protein sequence | MSGKKAISKD LVGMTFPAVD VEWSDKDTML YALGVGARPA DGLDFIYEGR GPKVLPTYAV
IPGGRGLAGL MSGVEMKLEM LLHGEQSVEL LRPLPSSAKI KVTGRVSEVW DKGKAAVIGV
ESTGSDEKGP LFKTHATLFV RGAGGFGGER GPSGVDSTPP DRTPDAVVED VTRPEQGAIY
RLSGDRNPIH IDPDFAKLGG FEKPFVHGLC TYGFVGRAVL RELCGNDPAR FKSLSGRFAA
QVYFGDTIIT KMWKTGDGVA IVQAETQNGN VVLSQAKAAF KP
|
|---|
| |