| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1788 |
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| Symbol | |
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| ID | 5455546 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 1942319 |
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| End bp | 1943152 |
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| Gene Length | 834 bp |
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| Protein Length | 277 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640877368 |
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| Product | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase |
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| Protein accession | YP_001413063 |
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| Protein GI | 154252239 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.381669 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 0.090615 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGTTC TGGACGGTCC GCGCGAGGAA TGGCGGCGTA TCCTGCATCA GGGAACGCCG
GTCTGGGTGA AGCCGGAGGA GGGCGGCAAG CTCCGCCTTG GAGACGGACG GACGGTGGAC
GAAGCCGCCG CGACCTATCT TCCGCCTTGC GATCCGACCA AGATCATCTG CATTCACCTG
AACTACGATT CGCGCCGCGT CGAGTTCAAG GCGCCGCCTC TCGTCACGCC AACCTACTTT
CAGAAGCCGC TGACGACGCT CAATTCCCAT CGCGGCTTTC TGAACCGTCC GGCCGACTGC
CGCTACCTGA ACTACGAAGG CGAGATCGCG GCGATCGTCG GCAAGCCGAT GCGCAATGTC
GCGCCCGATG AAGTGTGGGA CTGCCTTGCG GGCTTCGCGC CGGCCAACGA TGTCGGCGCG
CAGGATTTCC GCGACACGGA TGCAGGCTCC ATGTTGCGCG TCAAGGGGCA GGACGGTTTC
TGTCCCATTG GTCCGGGCAT CGTGCGCGGT GTCGACATCC GCAAGGAAAG CGTCCGCACC
TACATCAACG GCAAGATGGT GCAGGACGGG CCGGTCAGCG AGATGACCTT TCCGATCGAC
TACATCTTCG CCGATCTCTC GCGTCACATT ACTTTCCTTC CGGGCGACAT TGTGCTGACC
GGCACGCCCG CCAACTCGCG GCCCATGAAT ATCGGCGACG TCGTCGAAGT GGAGGTGACG
GGCATTGGAC GCATCTCGAA CACCGTCCAG GAAGTGCCGG CACCCGCGCA TGATGTCGGT
CACCAGCCGA CCGACACCGA CGCGGTGCGC CGCGTCGCGC TCGGCCAGTT CTGA
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| Protein sequence | MSVLDGPREE WRRILHQGTP VWVKPEEGGK LRLGDGRTVD EAAATYLPPC DPTKIICIHL
NYDSRRVEFK APPLVTPTYF QKPLTTLNSH RGFLNRPADC RYLNYEGEIA AIVGKPMRNV
APDEVWDCLA GFAPANDVGA QDFRDTDAGS MLRVKGQDGF CPIGPGIVRG VDIRKESVRT
YINGKMVQDG PVSEMTFPID YIFADLSRHI TFLPGDIVLT GTPANSRPMN IGDVVEVEVT
GIGRISNTVQ EVPAPAHDVG HQPTDTDAVR RVALGQF
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