| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1760 |
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| Symbol | |
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| ID | 5454485 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 1912715 |
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| End bp | 1913467 |
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| Gene Length | 753 bp |
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| Protein Length | 250 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640877341 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001413036 |
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| Protein GI | 154252212 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 41 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 0.141854 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGACGGG TAGACGGGAA AATCGCCTTT GTGACGGGCG GCGCCAACGG CATGGGGCGT
TCCCACGCCT TGCTGCTTGC GCGCGAAGGC GCAACGCTGA TCGTGACCGA CATGGACGAG
AAGGGCGGCA ACGCCGTGGT CGAGGAGATC AACGATCACG GTGGGCAGGC GCGATTTTTC
AGGCACGATG TGTCGAGCGT CTCGGATTGG GAGCGGATTT CACAGCAGGC GAAGTCCACT
TTCGGACGCG TCGACATCCT CGTGAACAAT GCCGGTATTC TCGTTTTTTC TGCTGTGCAG
GACACCTCGA ATGAAGACTT CGCACGTGTT CTCGACGTCA ATGTAAAAAG CGTATTCTAT
GGCACGAAAT ATATATTACC CGCGATGAAG GCGGCTGGCG GCGGTTCGAT CGTCAATATT
TCCTCGATCT ACGGACTGAT CGGTGCGCCC GCCACGGCGG CGTATCAGGC ATCGAAGGGC
GCCGTTCGCT TGCTGACGAA ATCGACGGCT GTGGATTATG CGCCTTTCAA GATTCGCGTG
AATTCCGTGC ACCCCGGAAT CATCCGCACG AATATGACAA AGGATATTCT CAGCGATGCG
GATGTCGCCA AACAGGTCTT GAGCGCCACG CTTATTGGTC GGCCGGCCGA ACCCGTCGAG
GTGTCCTATG CGGTCCTGTT TTTGGCATCC GACGAGTCGT CCTACATGAC AGGCTCCGAG
GTTGTCGTCG ACGGAGGCTA CACGACCATG TGA
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| Protein sequence | MGRVDGKIAF VTGGANGMGR SHALLLAREG ATLIVTDMDE KGGNAVVEEI NDHGGQARFF
RHDVSSVSDW ERISQQAKST FGRVDILVNN AGILVFSAVQ DTSNEDFARV LDVNVKSVFY
GTKYILPAMK AAGGGSIVNI SSIYGLIGAP ATAAYQASKG AVRLLTKSTA VDYAPFKIRV
NSVHPGIIRT NMTKDILSDA DVAKQVLSAT LIGRPAEPVE VSYAVLFLAS DESSYMTGSE
VVVDGGYTTM
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