| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1748 |
|---|
| Symbol | |
|---|
| ID | 5456983 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 1891272 |
|---|
| End bp | 1892123 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640877323 |
|---|
| Product | HemK family modification methylase |
|---|
| Protein accession | YP_001413024 |
|---|
| Protein GI | 154252200 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2890] Methylase of polypeptide chain release factors |
|---|
| TIGRFAM ID | [TIGR00536] HemK family putative methylases
[TIGR03534] protein-(glutamine-N5) methyltransferase, release factor-specific |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.190909 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 56 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGAGCC GCGATCATGC GATGCGGATG CTTGGCTGGC GGCTGAAGCA GGCGGGCTTG
CCGACGCCGG AGCTCGATGC GCGCATTCTG GTCCAGGCCG TCACCGGCGC CACCGATATC
GAGATGATCC GCGAACCGGC GGCGCCGATC AGCGCCGCAG AGGAAGAAGC ACTGGCCGGT
TTTGAGCGCC GCCGTCTCGC CCGCGAGCCC GTCTCCCGCA TTCTCGGCGC GCGCGAATTC
TGGGGCCTCG CCTTCGCCGT CACCTCGGCA ACGCTCGATC CGCGACCGGA CAGCGAGACG
CTGATCGAGG CATCGCTGAA ATGTCTGGCA CCCCTCGCCA GGCCCCGCCT GCTCGATCTC
GGCACGGGCA CCGGATGCCT CCTGCTCACG CTTCTCCATG AACGGCCGGA TGCAAGCGGC
ATCGGCGTCG ATATTTCGGA AGAGGCGCTT CAGGTCGCGC GGGAGAATTC GGCCCGGCTC
GGCCTTGCCG CGCGCGCCCG CTTCCAGCCC GGCAACTGGA TGGAAGGGCT CGGCGAAAAA
TTCGATCTCG TGATTTCCAA TCCGCCCTAT ATCGCCAGCG GCGAAATCGA GGTGCTCGAG
CCGGAGGTGC GCGGCCACGA TCCGCGGCTC GCGCTTGATG GCGGCGCGGA CGGGCTCGAT
GCCTATCGCG CCATTGCCGC CGCGCTGCCG GACGTTTTGA CGCAGGAGGG GGTTGCCGTG
GTCGAATTGG GCGCCGGGCA GGCAGACGCG GTGCGCGGCA TCTTCGAGGC GGCGGGATGC
GCGGTTTTGC GCGTCGATCC GGACCTTTCG GGCGTGCCCC GGGCCCTCGT TGCAGCCCTG
CCACGGGCAT GA
|
|---|
| Protein sequence | MTSRDHAMRM LGWRLKQAGL PTPELDARIL VQAVTGATDI EMIREPAAPI SAAEEEALAG
FERRRLAREP VSRILGAREF WGLAFAVTSA TLDPRPDSET LIEASLKCLA PLARPRLLDL
GTGTGCLLLT LLHERPDASG IGVDISEEAL QVARENSARL GLAARARFQP GNWMEGLGEK
FDLVISNPPY IASGEIEVLE PEVRGHDPRL ALDGGADGLD AYRAIAAALP DVLTQEGVAV
VELGAGQADA VRGIFEAAGC AVLRVDPDLS GVPRALVAAL PRA
|
|---|
| |