Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_1721 |
Symbol | |
ID | 5454000 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 1862255 |
End bp | 1863154 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640877296 |
Product | ECF subfamily RNA polymerase sigma-24 factor |
Protein accession | YP_001412997 |
Protein GI | 154252173 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02957] RNA polymerase sigma-70 factor, TIGR02957 family |
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Plasmid Coverage information |
Num covering plasmid clones | 42 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 59 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGCAA CGACGAAGCC GGCCACGCCG GACGAGACAT TCGAGCGCCA TCGCGGCCGC GCCTTCGCCG TCGCCTACCG CATTCTCGGC TCGGCGAGCG ACGCGGAAGA CGCGGTACAG GAAGCCTGGC TGCGCTGGCG CGGCACTGAC ACGGCGGGCA TCCGCAACCC GGAAGCATGG CTCGTGACCG CCGTGGCGCG GCTCGCCATC GACCAGCTCC GCACCGCCCG TGCGCGCCGG GAAACCTATG TCGGACCCTG GTTGCCCGAA CCCATCGTAA CCGCCGCGCG CGAAAGCGAA CCGACACCGG AGGACCGCCT CGCGCTTGCC GACGATATTT CGATCGCGCT TCTCCATGTG CTCGAACGGC TCGCGCCGGA AGAACGCGCC GCCTTCCTGC TGCATGACGC ATTCGACTAC GACTATGGCG AACTGGCGGC CCTGCTCGGC AAGTCGGAAG CCGCTTGCCG CCAGACGGTA AGCCGGGCGC GCCGCCGTGT GCAGGAAACG CATCCCCGCT TCGACACGAG CGCGCGCGAA CATGCGCGCC TCGCGGCCGC CTTCAGCGCC GCGATTTCAA GCGCCGATCC GAAGGCGCTG CTGGATTGCT TTACAGAGGA TGTCGTTCTT CTTTCGGATG GCGGCGGCAA GGCGCTCGCG GCCCTCAACC CCATTTACGG CGCCGATCAC GTCATGCGCT TCTTGCTCGG CATTCTGAGG AAACGGCCGG ACGGCTTCAG GCTGGAACCC GCCATCGTCA ATGGCTTGCC TGGCTTCATC GCTTACGACG ACACAGGCGT CCATTCGACG CTCGGCTTCG CCGTCATCGA CGGAAAAATC TCGGCGCTTT ATATGATGCG CAATCCCGAC AAGTTGCAGC GGGTCGACCT AAGGCGTTAG
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Protein sequence | MTATTKPATP DETFERHRGR AFAVAYRILG SASDAEDAVQ EAWLRWRGTD TAGIRNPEAW LVTAVARLAI DQLRTARARR ETYVGPWLPE PIVTAARESE PTPEDRLALA DDISIALLHV LERLAPEERA AFLLHDAFDY DYGELAALLG KSEAACRQTV SRARRRVQET HPRFDTSARE HARLAAAFSA AISSADPKAL LDCFTEDVVL LSDGGGKALA ALNPIYGADH VMRFLLGILR KRPDGFRLEP AIVNGLPGFI AYDDTGVHST LGFAVIDGKI SALYMMRNPD KLQRVDLRR
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