Gene Plav_1721 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_1721 
Symbol 
ID5454000 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp1862255 
End bp1863154 
Gene Length900 bp 
Protein Length299 aa 
Translation table11 
GC content66% 
IMG OID640877296 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_001412997 
Protein GI154252173 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02957] RNA polymerase sigma-70 factor, TIGR02957 family 


Plasmid Coverage information

Num covering plasmid clones42 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones59 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGCAA CGACGAAGCC GGCCACGCCG GACGAGACAT TCGAGCGCCA TCGCGGCCGC 
GCCTTCGCCG TCGCCTACCG CATTCTCGGC TCGGCGAGCG ACGCGGAAGA CGCGGTACAG
GAAGCCTGGC TGCGCTGGCG CGGCACTGAC ACGGCGGGCA TCCGCAACCC GGAAGCATGG
CTCGTGACCG CCGTGGCGCG GCTCGCCATC GACCAGCTCC GCACCGCCCG TGCGCGCCGG
GAAACCTATG TCGGACCCTG GTTGCCCGAA CCCATCGTAA CCGCCGCGCG CGAAAGCGAA
CCGACACCGG AGGACCGCCT CGCGCTTGCC GACGATATTT CGATCGCGCT TCTCCATGTG
CTCGAACGGC TCGCGCCGGA AGAACGCGCC GCCTTCCTGC TGCATGACGC ATTCGACTAC
GACTATGGCG AACTGGCGGC CCTGCTCGGC AAGTCGGAAG CCGCTTGCCG CCAGACGGTA
AGCCGGGCGC GCCGCCGTGT GCAGGAAACG CATCCCCGCT TCGACACGAG CGCGCGCGAA
CATGCGCGCC TCGCGGCCGC CTTCAGCGCC GCGATTTCAA GCGCCGATCC GAAGGCGCTG
CTGGATTGCT TTACAGAGGA TGTCGTTCTT CTTTCGGATG GCGGCGGCAA GGCGCTCGCG
GCCCTCAACC CCATTTACGG CGCCGATCAC GTCATGCGCT TCTTGCTCGG CATTCTGAGG
AAACGGCCGG ACGGCTTCAG GCTGGAACCC GCCATCGTCA ATGGCTTGCC TGGCTTCATC
GCTTACGACG ACACAGGCGT CCATTCGACG CTCGGCTTCG CCGTCATCGA CGGAAAAATC
TCGGCGCTTT ATATGATGCG CAATCCCGAC AAGTTGCAGC GGGTCGACCT AAGGCGTTAG
 
Protein sequence
MTATTKPATP DETFERHRGR AFAVAYRILG SASDAEDAVQ EAWLRWRGTD TAGIRNPEAW 
LVTAVARLAI DQLRTARARR ETYVGPWLPE PIVTAARESE PTPEDRLALA DDISIALLHV
LERLAPEERA AFLLHDAFDY DYGELAALLG KSEAACRQTV SRARRRVQET HPRFDTSARE
HARLAAAFSA AISSADPKAL LDCFTEDVVL LSDGGGKALA ALNPIYGADH VMRFLLGILR
KRPDGFRLEP AIVNGLPGFI AYDDTGVHST LGFAVIDGKI SALYMMRNPD KLQRVDLRR