| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1720 |
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| Symbol | |
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| ID | 5455675 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 1861299 |
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| End bp | 1862258 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640877295 |
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| Product | tyrosine recombinase XerD |
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| Protein accession | YP_001412996 |
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| Protein GI | 154252172 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
| Num covering plasmid clones | 41 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 0.514315 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCGAAAG AGTCTCAGGA GCGCGGGCAT CATCTCGAAG CTTTTCTGGA AATGTTGAGT
GCCGAACGTG GCGCCGCGCG CAACACGCTC GACGCCTATG AGCGCGACCT GAAGGATTTT
TCAGGCTTCC TCGTTTCGCG CGGCCGCGAT CTCGTTCAGG CATCCGCGAA CGACATCCGG
CAATATCTCG AAAACCTCTC GGACCAGGGC CTTTCCGCTT CGACGGCGGC TCGGCGTCTT
TCCGCCATTC GCCAGTTTCA CGGCTTCCTG TTCGCTGAAG GGGTTCGCAC CGACGATCCT
TGCGGTTCGA TCGAAGGTCC GCGCCGGGCA CGGCCCTTGC CGAAGACGTT GACCGTGGAG
GAAGTGGACG CGCTTCTCTC GGCCGCCCAG CGCGCGGAGG ATGGCCGCAC GCAGGAAGAA
AGCGTGCTTG CCTACAAGCG CGCCCGTCTT GTCTGTCTCA TGGAAGTTCT CTACGCCACC
GGGCTTCGCG TGTCGGAGCT GGTCGGCCTT CCTCTGTCCG CCGTGCGCGG GCAGGAGCGT
TTTCTCGCCG TCAGCGGCAA GGGCGGGCGG GAGCGGCTCG TGCCTCTTTC GGAAACCGCG
CGCGCCGCAA TCGATGCCTA TCTGCCGCTT CGCTCGTTGC GTCTTGGCGA GCAGGTTTCG
CCCTGGCTTT TCCCGTCGCG CGGCAGGCAG GGACATCTCA CGCGTCACCG CTTCGCGCAA
TTGCTGAAGG ACCTCGCCGT TGCGGCCGGG CTCGATGCGA GCCGCGTTTC GCCGCATACG
CTGCGCCACG CCTTCGCCAG CCATCTTCTC GCCAATGGCG CGGATCTGCG CGCGGTGCAG
CAGATGCTCG GCCATGCCGA CATTTCAACC ACGCAGATTT ACACGCATGT GCTGGATGAG
CGGCTGAAGG AACTGGTGCA GACGCATCAT CCGCTGGCAA AGAAAGGCAA GGCGTCCTAA
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| Protein sequence | MSKESQERGH HLEAFLEMLS AERGAARNTL DAYERDLKDF SGFLVSRGRD LVQASANDIR
QYLENLSDQG LSASTAARRL SAIRQFHGFL FAEGVRTDDP CGSIEGPRRA RPLPKTLTVE
EVDALLSAAQ RAEDGRTQEE SVLAYKRARL VCLMEVLYAT GLRVSELVGL PLSAVRGQER
FLAVSGKGGR ERLVPLSETA RAAIDAYLPL RSLRLGEQVS PWLFPSRGRQ GHLTRHRFAQ
LLKDLAVAAG LDASRVSPHT LRHAFASHLL ANGADLRAVQ QMLGHADIST TQIYTHVLDE
RLKELVQTHH PLAKKGKAS
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